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Report for CCDS16610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16610.1 Public Mus musculus 2 Rpap1 23 108 98 CCDS HistoryNCBI Gene:68925Re-query CCDS DB by CCDS ID:16610.1Re-query CCDS DB by GeneID:68925See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048493.11 ENSMUSP00000037275.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048493.11Link to Ensembl Protein Viewer:ENSMUSP00000037275.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048493Re-query CCDS DB by Protein ID:ENSMUSP00000037275
Original member Current member EBI ENSMUST00000099529.8 ENSMUSP00000097127.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099529.8Link to Ensembl Protein Viewer:ENSMUSP00000097127.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099529Re-query CCDS DB by Protein ID:ENSMUSP00000097127
Original member Current member EBI ENSMUST00000110793.7 ENSMUSP00000106420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110793.7Link to Ensembl Protein Viewer:ENSMUSP00000106420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110793Re-query CCDS DB by Protein ID:ENSMUSP00000106420
Original member Current member NCBI NM_001163701.1 NP_001157173.1 Accepted alive Link to Nucleotide Sequence:NM_001163701.1Link to Protein Sequence:NP_001157173.1Re-query CCDS DB by Nucleotide ID:NM_001163701Re-query CCDS DB by Protein ID:NP_001157173Link to BLAST:NP_001157173.1
Original member Current member NCBI NM_177294.5 NP_796268.3 Accepted alive Link to Nucleotide Sequence:NM_177294.5Link to Protein Sequence:NP_796268.3Re-query CCDS DB by Nucleotide ID:NM_177294Re-query CCDS DB by Protein ID:NP_796268Link to BLAST:NP_796268.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157173.1 1409 Q80TE0-1 1409 100% 0 0
NP_796268.3 1409 Q80TE0-1 1409 100% 0 0

Chromosomal Locations for CCDS 16610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119764295 119764444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119764544 119764603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119764739 119764915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119767492 119768248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119769250 119769392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119769580 119769732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119769887 119770082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119770320 119770429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119770890 119771091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119771196 119771354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119771739 119771896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119772488 119772658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119773138 119773272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119773390 119773572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119773791 119773958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119774118 119774219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119774953 119775051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119775296 119775411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119776666 119776893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119778117 119778338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119780056 119780176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119782646 119782735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119783083 119783231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119783734 119783914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4230 nt):
ATGATGCTGTCCAGACCGAAGCCTGGAGAGTCAGAGGTGGACCTGCTGCGCTTCCAGAGCCAGTTCCTTG
AGGCTGGTGCAGCCCCGGCGGTGCAGCTGGTGAAGGGGAGTAGGAGGCATGGTGATGCTCCTCCAGACCG
GCTCCCACCGCAGGACCATCGGGATGTGGTGATGCTGGACAATCTCCCAGATTTGCCCCCAGCTCTGCTT
CCCGCTCCTGCAAAAAGAGCAAGACCGAGCCCTGGTCACCCGCTGCCTCACGATGAAGACCCTGAAGAGA
GGCTGAACAGGCATGATCAGCACATCACTGCTGTCTTGTCTAAGATTGTTGAACGAGATACAAGTTCAGT
CACTGTGACTCTGCCTGTGCCCAGTGGTGTTGCTTTCCCGCCTGTGTTCCATCGCTCTCAGGAGAGACAG
GTGAAACCAGCAGCATCTGGTAAAAGGAGCATCTTTGCCCAAGAGATTGCAGCAAGAAGGGTGTCAGGAA
ACAGGGTGACATCAGCTGAGCAAGTTGTCCCCAGCCTAGACACACCAGAGGGTGCTGTGCCCTGTGAGAC
ACCCTCCTTCAGGGACAGAAGCAACCAGCTTCCTGGGAGGAGTCATGGCTTCCACAGACCAAATCTAGTC
ACAGGAAAGGGGCTCAGGAGCAAGGTGGCTGAGCAGGAGGTCCAGACAATCCATGAAGAGAATGTAGCAA
GACTACAAGCCATGGATCCTGAGGAGATCCTGAAGGAGCAGCAGCAGTTACTGGCTCAACTCGACCCCAG
CTTGGTTGCCTTCTTGAGATCTCATAGCCAGGTCCAGGAACAAACAGGAACAAAGGCCACCAAGAAGCAG
AGTCCAAAGAGACCCTCAGTTCTTGTCACTAAAGAAGAGCCTGTCACGTCAACTCGTACAAGGGAGCCTA
GGACTGGGGACAAGCTGGAAGAAAAGCCGGAGGCCACGGTGGAGGACAAGATGGAAGACAAGCTGCAGCC
AAGAACCCCAGCACTGAAACTGCCCATGACCCCCAGCAAAGACTGGCTCCACATGGACACCGTAGAGCTG
GACAAGCTCCACTGGACCCAGGACCTGCCCCCACTCCGGCGGCAGCAGACACAGGAGAGAATGCAGGCTC
GATTCAGCCTTCAGGGCGAGCTCCTGGCGCCTGATGTGGATCTTCCCACACATCTGGGCCTGCACCACCA
CGGAGAAGAGGCCGAGCGAGCAGGGTATTCTCTACAGGAGCTGTTCCACCTGACCCGTAGCCAGGTGTCC
CAGCAGAGAGCACTAGCATTGCAAGTGTTGTCCCAGATCGTCGGCAGGGCCCAGGCTGGTGAGTTTGGGG
ACCGCCTAGTGGGCAGTGTCTTGCGCCTCCTCTTGGATGCTGGTTTCCTCTTCCTGCTGCGCTTCTCTCT
GGATGACAGGGTGGACAGTGTCATCGCAGCAGCTGTCCGGGCTCTTCGTACTCTGCTAGTGGCTCCTGGA
GATGAGGAGCTCCTGGACCGCACCTTCTCTTGGTATCATGGAGCTTCGGTGTTCCCTCTGATGCCCAGCC
AGGACGATAAAGAGGATGAAGATGAAGATGAGGAACTCGAAACAGAAAAGGTGAAGAGAAAGACACCTGA
GGAAGGAAGCCGCCCTCCCCCGGACCTGGCCAGACATGATGTCATCAAGGGGCTCCTGGCTACCAACCTG
CTTCCTCGGCTCCGCTATGTGCTGGAGGTGACCTGCCCAGGACCCTCTGTGATCCTTGACATCCTGGCTG
TGCTTATCCGCCTGGCCCGGCATTCCCTGGAGTCGGCCATGAGGGTCCTGGAGTGTCCTCGGCTGATGGA
GACCATAGTTCAAGAGTTCCTGCCTACCAGTTGGTCCCCTATAGGGGTGGGGCCTACTCCCAGTCTATAT
AAAGTGCCTTGTGCTTCTGCCATGAAACTGCTTAGAGTCCTGGCTTCAGCTGGGAGGAATATTGCTGCTC
GACTGCTAAGCGGCTTTGATGTCAGGAGCCGCCTGTGCCGATTCATAGCTGAAGCGCCACATGACCTGGC
CTTGCCCCCCGAGGAAGCAGAGATTCTGACCACTGAGGCCTTCCGTCTGTGGGCCGTGGCTGCCTCCTAT
GGCCAGGGTGGTGACCTTTACAGGGAGCTGTACCCAGTGCTGCTGCGGGCCTTGCAGACACTGCCTACAG
AGCTCAGCGCTCATCCCCTACAGCCCCTGGCCATGCAGCGGGTGGCCGCTCTGTTCACACTGCTTACCCA
GCTCACCCTGGCAGCTAGCAGCATACCTCCTGAGCCCGCCAGTGGCCCTGCTGAGTCCTGTGTGCCGGCC
ATCCCTTCCTCAGTCACCTGGACACAGGTGTCTGGACTCAAGCCACTGGTGGAGCCATGTCTAAAGCAGA
CCCTAAAGTTCCTGCCCAGGCCGGATGTGTGGAATGCCCTGGGCCCAGTGCCCAGTGCCTGCCTTCTGTT
CTTGGGTGCTTACTATCAGGCCTGGAGCCGGCAGTCACACTTGTGCCCAGAAGATTGGCTTCAGGACATG
GAGCGCTTGTTGGATGAGTCCTTGCTGCCACTGCTGAGCCAGCCTCCTCTGGGCAGTCTGTGGGATTCCT
TAAGGGACTGCTCCCCACTCTGCAATCCGCTGTCCTGTGCTTCCAACCCGGAAGCCCTCCCCAGCCTTGT
GTCACTGGGCTGTGCAGGAGGCTGTCCCCCTCTCAGTGTGGCTGGCTCAGCCTCACCCTTCCCGTTCCTC
ACTGCCCTCCTCTCCCTCATCAACACTCTGGTCCAGAGCCACAAGGGGCTCTGTGGACAGCTGTCTGCTG
TGTTGACTGCCCCAGGACTCCAGAACTACTTTCTCCAGTGTGTGGCTCCTGCGCCTGCCCCACAGCTCAC
ACCCTTCTCTGCCTGGGCCCTGCACCATGAGTACCACCTACAGTATCTGGTGCTTTCCTTCGCCCACAAA
GCGGCAACACTGCAGCCAGAACCAGCTGCCAGCACTGCCCTCCACCATGCTGTAGCCTTGGTCCTGCTGA
GCCGGCTGTTGCCTGGAAGCGAATACCTTGCCCAGGAGCTGCTGCTGAGCTGTGTGTTCCGGCTGGAGTT
CCTGCCGGAAAGTGCTTCAGGGGGCCCAGAGGCAGCTGACTTCTCCGATGGACTGTCCTTAGGGAGCAGT
GGGGACCCTCAGTGTAGACGAGGGGCCCTCCTCGTTCAAGCTTGCCGGGATCTCCCCAGCATCCGCAGCT
GCTACCTGGCCCATTGTTCACCAGCCCGAGCCAGTCTGCTGAGCTCCCAAGCCTTGTACTGTGGAGAGCT
ACTGCGAGTCTCAAGTCTGCTACTGCCTGTACCTAAGGAGCCACTGCTGGCCACTGACTGGCCCTTCCAG
CCGTTGATACATCTCTACCACCGAGCTTCAGATACTCCCTCTGGGCCACCTGCTGCTGACACTGTAGGCG
TTGCCATGCGGGTCCTACAATGGGTGCTAGTTCTGGAGAGCTGGCGCCCCGAGGTCCTCTGGGCTGTGCC
CCCTGCTGCCCGCCTAGCACGTCTCATGTGTGTGTACCTGGTGGATAGCGAGCTGTTTCGAGAGACTCCC
ATACAGCGACTGGTGGCAGCTCTTTTAGCTCGGCTCTGTCGGCCCCAAGTCTTGCCAAACCTCAAGCTGG
ACTGCCCCCTCCCTGGCCTGACCTCTTTTCCTGACCTTTATGCCAGCTTCTTAGACCATTTTGAGGCTGT
CTCTTTTGGGGACCACTTGTTTGGGGCCCTGGTCCTCCTTCCTCTGCAGCGTAGGTTCAGTGTTACCTTG
CGCCTCGCCCTCTTTGGGGAGCACGTGGGAGTGTTGCGAGCACTTGGCCTGCCTCTGACTCAGCTGCCTG
TGCCTCTGGAGTGCTACACAGAGCCTGCTGAAGACAGCCTGCCTCTCCTTCAGCTCTACTTCCGGGCCTT
GGTTACTGGTACACTCCGTGCACGTTGGTGCCCCATCCTCTACACTGTAGCCGTGGCTCATGTCAACAGT
TTCATCTTCTGCCAAGACCCAAAGAGCTCAGATGAGGTAAAGACTGCCCGAAGGAGTATGCTGCAGAGAA
CGTGGCTGCTGACAGATGAGGGGCTGCGGCAGCATCTCCTCCACTATAAGCTTCCCAACTCCAGCCTCCC
AGAGGGCTTTGAGCTGTATTCCCAGTTACCTCGCCTGAGGCAGCAGTGCCTTCAGACACTGCCCACAGAG
GGGCTCCAGAATGGAGGAGTCAAGACATAG

Translation (1409 aa):
MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALL
PAPAKRARPSPGHPLPHDEDPEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQ
VKPAASGKRSIFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSFRDRSNQLPGRSHGFHRPNLV
TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQ
SPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSKDWLHMDTVEL
DKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVS
QQRALALQVLSQIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPG
DEELLDRTFSWYHGASVFPLMPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLATNL
LPRLRYVLEVTCPGPSVILDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY
KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEAFRLWAVAASY
GQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTLAASSIPPEPASGPAESCVPA
IPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPVPSACLLFLGAYYQAWSRQSHLCPEDWLQDM
ERLLDESLLPLLSQPPLGSLWDSLRDCSPLCNPLSCASNPEALPSLVSLGCAGGCPPLSVAGSASPFPFL
TALLSLINTLVQSHKGLCGQLSAVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSFAHK
AATLQPEPAASTALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS
GDPQCRRGALLVQACRDLPSIRSCYLAHCSPARASLLSSQALYCGELLRVSSLLLPVPKEPLLATDWPFQ
PLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAARLARLMCVYLVDSELFRETP
IQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTL
RLALFGEHVGVLRALGLPLTQLPVPLECYTEPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNS
FIFCQDPKSSDEVKTARRSMLQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTE
GLQNGGVKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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