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Report for CCDS3606.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3606.1 |
Public |
Homo sapiens |
4 |
GPAT3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84803](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3606.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:84803](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 3606.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000264409.5 |
ENSP00000264409.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000264409.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000264409.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000264409](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000264409](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000395226.6 |
ENSP00000378651.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000395226.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000378651.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000395226](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000378651](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000611707.4 |
ENSP00000482571.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000611707.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000482571.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000611707](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000482571](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001256421.1 |
NP_001243350.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001256421.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001243350.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001256421](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001243350](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001243350.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001256422.1 |
NP_001243351.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001256422.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001243351.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001256422](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001243351](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001243351.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032717.5 |
NP_116106.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032717.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_116106.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032717](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_116106](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_116106.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 3606.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1305 nt): ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTT TACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGA GTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGT ATTATCCAAAGAGATGAGTCACCCATGGAAAAAGGGCTCTCTGGTCTACGAGGAAGGGACTTTGAGCTGT CTGACGTGTTTTATTTCTCCAAGAAGGGATTGGAAGCCATTGTAGAAGATGAAGTGACCCAGAGGTTTTC CTCAGAGGAGCTAGTGTCATGGAATCTCCTCACAAGAACCAATGTAAATTTCCAGTACATCAGTCTGCGG CTCACTATGGTGTGGGTGCTGGGCGTCATAGTGCGCTATTGTGTCCTACTGCCTCTGAGGGTTACCTTGG CTTTCATTGGGATCAGTTTGCTGGTTATAGGAACTACACTGGTTGGGCAGCTGCCAGACAGCAGCCTCAA AAACTGGCTGAGTGAACTGGTCCATCTGACTTGCTGCCGGATCTGTGTGCGAGCCCTCTCTGGTACCATT CATTATCATAACAAGCAGTACAGACCCCAGAAGGGAGGCATTTGTGTTGCCAACCATACTTCCCCCATTG ATGTTTTAATCTTGACAACGGATGGATGTTATGCTATGGTTGGCCAGGTTCATGGCGGCTTGATGGGAAT TATTCAGAGAGCTATGGTCAAGGCTTGTCCTCATGTCTGGTTTGAACGCTCAGAAATGAAGGATCGACAC CTGGTTACTAAGAGACTAAAAGAACATATTGCTGATAAGAAGAAACTACCCATACTAATTTTTCCTGAAG GAACTTGCATCAACAATACTTCAGTCATGATGTTTAAAAAGGGGAGCTTTGAAATTGGAGGAACCATACA TCCAGTTGCAATTAAGTATAACCCTCAGTTCGGTGATGCATTTTGGAACAGTAGTAAATACAACATGGTG AGCTACCTGCTTCGAATGATGACCAGCTGGGCCATCGTCTGTGACGTGTGGTACATGCCCCCCATGACCA GAGAGGAAGGAGAAGATGCAGTCCAGTTTGCTAACAGGGTTAAGTCTGCTATTGCTATACAAGGAGGCCT GACTGAACTTCCCTGGGATGGAGGACTAAAGAGAGCAAAGGTGAAGGACATCTTTAAGGAAGAGCAGCAG AAAAATTACAGCAAGATGATTGTGGGCAATGGATCTCTCAGCTAA
Translation (434 aa): MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVG IIQRDESPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFQYISLR LTMVWVLGVIVRYCVLLPLRVTLAFIGISLLVIGTTLVGQLPDSSLKNWLSELVHLTCCRICVRALSGTI HYHNKQYRPQKGGICVANHTSPIDVLILTTDGCYAMVGQVHGGLMGIIQRAMVKACPHVWFERSEMKDRH LVTKRLKEHIADKKKLPILIFPEGTCINNTSVMMFKKGSFEIGGTIHPVAIKYNPQFGDAFWNSSKYNMV SYLLRMMTSWAIVCDVWYMPPMTREEGEDAVQFANRVKSAIAIQGGLTELPWDGGLKRAKVKDIFKEEQQ KNYSKMIVGNGSLS
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