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Report for CCDS30097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30097.1 Public Mus musculus X Gria3 23 108 98 CCDS HistoryNCBI Gene:53623Re-query CCDS DB by CCDS ID:30097.1Re-query CCDS DB by GeneID:53623See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076349.11 ENSMUSP00000075687.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076349.11Link to Ensembl Protein Viewer:ENSMUSP00000075687.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076349Re-query CCDS DB by Protein ID:ENSMUSP00000075687
Original member NCBI NM_001281929.1 NP_001268858.1 Updated not alive Link to Nucleotide Sequence:NM_001281929.1Link to Protein Sequence:NP_001268858.1Re-query CCDS DB by Nucleotide ID:NM_001281929Re-query CCDS DB by Protein ID:NP_001268858
Current member NCBI NM_001281929.2 NP_001268858.2 Accepted alive Link to Nucleotide Sequence:NM_001281929.2Link to Protein Sequence:NP_001268858.2Re-query CCDS DB by Nucleotide ID:NM_001281929Re-query CCDS DB by Protein ID:NP_001268858Link to BLAST:NP_001268858.2
Original member NCBI NM_001358361.1 NP_001345290.1 Updated not alive Link to Nucleotide Sequence:NM_001358361.1Link to Protein Sequence:NP_001345290.1Re-query CCDS DB by Nucleotide ID:NM_001358361Re-query CCDS DB by Protein ID:NP_001345290
Current member NCBI NM_001358361.2 NP_001345290.2 Accepted alive Link to Nucleotide Sequence:NM_001358361.2Link to Protein Sequence:NP_001345290.2Re-query CCDS DB by Nucleotide ID:NM_001358361Re-query CCDS DB by Protein ID:NP_001345290Link to BLAST:NP_001345290.2
Original member NCBI NM_016886.4 NP_058582.3 Updated not alive Link to Nucleotide Sequence:NM_016886.4Link to Protein Sequence:NP_058582.3Re-query CCDS DB by Nucleotide ID:NM_016886Re-query CCDS DB by Protein ID:NP_058582
Current member NCBI NM_016886.5 NP_058582.4 Accepted alive Link to Nucleotide Sequence:NM_016886.5Link to Protein Sequence:NP_058582.4Re-query CCDS DB by Nucleotide ID:NM_016886Re-query CCDS DB by Protein ID:NP_058582Link to BLAST:NP_058582.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268858.2 888 Q9Z2W9-1 888 100% 0 0
NP_001345290.2 888 Q9Z2W9-1 888 100% 0 0
NP_058582.4 888 Q9Z2W9-1 888 100% 0 0

Chromosomal Locations for CCDS 30097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 41401565 41401655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41402801 41402959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41478560 41478799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41541076 41541263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41569888 41569941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41588464 41588625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41591710 41591877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41595682 41595786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41596619 41596726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41598454 41598660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41609914 41610290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41620797 41620995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41654006 41654253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41669501 41669615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41672219 41672464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGGGGCAAAGCGTGCTCCGGGCGGTCTTCTTTTTAGTCCTGGGGCTTTTGGGTCATTCTCACGGAGGAT
TCCCCAACACCATCAGCATAGGTGGACTTTTCATGAGAAACACGGTACAGGAGCACAGTGCTTTCCGCTT
TGCTGTGCAGTTATACAACACCAACCAGAACACCACTGAGAAGCCCTTCCATTTGAACTACCACGTAGAC
CACTTGGATTCCTCCAATAGTTTTTCTGTGACTAATGCTTTCTGCTCCCAGTTCTCCAGAGGGGTGTATG
CTATCTTTGGATTCTATGACCAGATGTCAATGAACACACTGACCTCCTTCTGTGGGGCCCTGCATACATC
TTTCGTCACACCTAGCTTTCCCACTGATGCCGATGTGCAGTTTGTCATCCAGATGCGCCCAGCCTTAAAG
GGTGCCATTCTGAGTCTTCTGGGTTACTACAAGTGGGAGAAGTTTGTGTACCTCTATGACACAGAACGAG
GGTTTTCCATCCTGCAAGCAATTATGGAAGCAGCAGTGCAAAACAACTGGCAAGTGACAGCAAGGTCTGT
GGGAAACATAAAGGACATCCAGGAATTCAGACGCATCATTGAAGAAATGGACAGAAGGCAGGAAAAACGA
TACTTGATTGACTGTGAAGTCGAAAGGATTAACACAATTTTGGAACAGGTTGTGATCCTGGGGAAACATT
CAAGAGGTTATCACTACATGCTTGCTAACCTGGGTTTTACTGACATTGTACTGGAAAGAGTCATGCATGG
GGGAGCCAACATTACAGGTTTCCAGATTGTCAACAATGAAAACCCAATGGTCCAGCAATTCATACAGCGC
TGGGTGAGACTGGATGAAAGGGAATTCCCTGAAGCCAAGAATGCACCACTAAAGTATACATCTGCACTGA
CACACGACGCAATACTGGTCATAGCAGAAGCCTTCCGATACCTGAGGAGGCAGCGAGTGGATGTATCCCG
CAGAGGCAGTGCTGGAGACTGCTTAGCAAATCCTGCTGTGCCCTGGAGTCAAGGAATTGATATTGAGAGA
GCTCTGAAAATGGTGCAAGTACAAGGAATGACTGGAAACATCCAATTTGACACTTATGGACGTAGGACAA
ATTATACCATTGATGTATATGAAATGAAAGTCTCAGGCTCTCGAAAAGCTGGTTACTGGAATGAGTATGA
AAGGTTTGTGCCCTTCTCAGATCAACAAATCAGCAATGACAGCTCATCCTCCGAGAACAGGACCATCGTA
GTGACTACCATTCTGGAATCACCATATGTAATGTATAAAAAGAATCATGAGCAACTGGAAGGAAATGAGC
GCTATGAAGGCTATTGTGTCGATTTAGCCTATGAAATAGCCAAACACGTAAGGATCAAATACAAATTGTC
CATTGTCGGTGATGGGAAATATGGCGCAAGGGATCCAGAGACTAAAATATGGAATGGCATGGTTGGGGAA
CTTGTCTATGGAAGAGCTGATATAGCTGTTGCTCCACTCACTATAACATTGGTCCGTGAAGAAGTCATAG
ATTTTTCAAAGCCATTTATGAGCCTGGGGATCTCCATCATGATAAAGAAGCCTCAGAAATCAAAGCCAGG
CGTATTTTCATTCCTGGATCCTTTAGCTTATGAAATCTGGATGTGCATTGTCTTCGCTTACATTGGAGTC
AGTGTAGTTCTCTTCCTAGTCAGCAGATTTAGCCCTTATGAGTGGCACTTGGAAGACAACAATGAAGAAC
CTCGTGACCCACAAAGCCCTCCTGATCCTCCCAATGAATTTGGAATATTTAACAGTCTTTGGTTTTCCTT
GGGTGCTTTTATGCAGCAAGGATGTGATATTTCTCCAAGATCACTTTCTGGGCGCATTGTTGGAGGGGTT
TGGTGGTTCTTCACCCTGATCATAATCTCTTCCTACACTGCAAACCTTGCTGCTTTCCTGACTGTGGAGA
GGATGGTGTCCCCCATAGAGAGCGCTGAAGATTTAGCCAAGCAGACTGAAATTGCATACGGGACCCTGGA
CTCTGGTTCAACAAAAGAATTTTTCAGAAGATCCAAAATTGCTGTGTATGAGAAAATGTGGTCTTACATG
AAATCCGCAGAGCCATCTGTGTTTACCAAAACAACAGCTGATGGGGTAGCCCGAGTTCGGAAGTCCAAGG
GAAAGTTCGCCTTCCTGCTGGAGTCAACCATGAATGAGTACATTGAGCAGAGAAAGCCGTGTGATACGAT
GAAAGTTGGTGGAAATCTGGATTCCAAAGGCTATGGTGTGGCAACCCCTAAAGGCTCAGCATTAAGAACG
CCTGTAAACCTTGCAGTATTGAAACTCAGTGAACAAGGCATCTTAGACAAGCTGAAAAACAAATGGTGGT
ACGATAAGGGGGAATGTGGAGCCAAGGACTCCGGGAGTAAGGACAAGACCAGTGCTCTAAGCCTGAGCAA
TGTGGCAGGCGTGTTCTATATACTTGTCGGAGGTCTGGGGCTGGCCATGATGGTGGCTTTGATAGAATTC
TGTTACAAATCACGGGCAGAGTCCAAACGCATGAAACTCACAAAGAACACCCAAAACTTTAAGCCTGCTC
CTGCCACCAACACTCAGAATTACGCTACATACAGAGAAGGCTACAACGTGTATGGAACAGAAAGTGTTAA
GATCTAG

Translation (888 aa):
MGQSVLRAVFFLVLGLLGHSHGGFPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVD
HLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALK
GAILSLLGYYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDIQEFRRIIEEMDRRQEKR
YLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIVLERVMHGGANITGFQIVNNENPMVQQFIQR
WVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIER
ALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSDQQISNDSSSSENRTIV
VTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGE
LVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGV
SVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGV
WWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYM
KSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRT
PVNLAVLKLSEQGILDKLKNKWWYDKGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEF
CYKSRAESKRMKLTKNTQNFKPAPATNTQNYATYREGYNVYGTESVKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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