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Report for CCDS56044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56044.1 Public Homo sapiens 17 MIF4GD 24 110 108 CCDS HistoryNCBI Gene:57409Re-query CCDS DB by CCDS ID:56044.1Re-query CCDS DB by GeneID:57409See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325102.13 ENSP00000321625.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325102.13Link to Ensembl Protein Viewer:ENSP00000321625.8Re-query CCDS DB by Nucleotide ID:ENST00000325102Re-query CCDS DB by Protein ID:ENSP00000321625
Original member Current member EBI ENST00000618645.5 ENSP00000484245.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618645.5Link to Ensembl Protein Viewer:ENSP00000484245.1Re-query CCDS DB by Nucleotide ID:ENST00000618645Re-query CCDS DB by Protein ID:ENSP00000484245
Original member Current member NCBI NM_001242501.1 NP_001229430.1 Accepted alive Link to Nucleotide Sequence:NM_001242501.1Link to Protein Sequence:NP_001229430.1Re-query CCDS DB by Nucleotide ID:NM_001242501Re-query CCDS DB by Protein ID:NP_001229430Link to BLAST:NP_001229430.1
Original member Current member NCBI NM_001365752.1 NP_001352681.1 Accepted alive Link to Nucleotide Sequence:NM_001365752.1Link to Protein Sequence:NP_001352681.1Re-query CCDS DB by Nucleotide ID:NM_001365752Re-query CCDS DB by Protein ID:NP_001352681Link to BLAST:NP_001352681.1
Original member Current member NCBI NM_001365753.1 NP_001352682.1 Accepted alive Link to Nucleotide Sequence:NM_001365753.1Link to Protein Sequence:NP_001352682.1Re-query CCDS DB by Nucleotide ID:NM_001365753Re-query CCDS DB by Protein ID:NP_001352682Link to BLAST:NP_001352682.1
Original member Current member NCBI NM_001365754.1 NP_001352683.1 Accepted alive Link to Nucleotide Sequence:NM_001365754.1Link to Protein Sequence:NP_001352683.1Re-query CCDS DB by Nucleotide ID:NM_001365754Re-query CCDS DB by Protein ID:NP_001352683Link to BLAST:NP_001352683.1
Original member Current member NCBI NM_001365755.1 NP_001352684.1 Accepted alive Link to Nucleotide Sequence:NM_001365755.1Link to Protein Sequence:NP_001352684.1Re-query CCDS DB by Nucleotide ID:NM_001365755Re-query CCDS DB by Protein ID:NP_001352684Link to BLAST:NP_001352684.1
Original member Current member NCBI NM_001370592.1 NP_001357521.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370592.1Link to Protein Sequence:NP_001357521.1Re-query CCDS DB by Nucleotide ID:NM_001370592Re-query CCDS DB by Protein ID:NP_001357521Link to BLAST:NP_001357521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229430.1 222 A9UHW6-1 222 100% 0 0
NP_001352681.1 222 A9UHW6-1 222 100% 0 0
NP_001352682.1 222 A9UHW6-1 222 100% 0 0
NP_001352683.1 222 A9UHW6-1 222 100% 0 0
NP_001352684.1 222 A9UHW6-1 222 100% 0 0
NP_001357521.1 222 A9UHW6-1 222 100% 0 0

Chromosomal Locations for CCDS 56044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75266740 75266967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75267538 75267630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75267746 75267901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75268083 75268192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75270114 75270195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGGGGAGCCCAGTAGAGAGGAGTATAAAATCCAGTCCTTTGATGCAGAGACCCAGCAGCTGCTGAAGA
CAGCACTCAAAGATCCGGGTGCTGTGGACTTGGAGAAAGTGGCCAATGTGATTGTGGACCATTCTCTGCA
GGACTGTGTGTTCAGCAAGGAAGCAGGACGCATGTGCTACGCCATCATTCAGGCAGAGAGTAAACAAGCA
GGCCAGAGTGTCTTCCGACGTGGACTCCTCAACCGGCTGCAGCAGGAGTACCAGGCTCGGGAGCAGCTGC
GAGCACGCTCCCTGCAGGGCTGGGTCTGCTATGTCACCTTTATCTGCAACATCTTTGACTACCTGAGGGT
GAACAACATGCCCATGATGGCCCTGGTGAACCCTGTCTATGACTGCCTCTTCCGGCTGGCCCAGCCAGAC
AGTTTGAGCAAGGAGGAGGAGGTGGACTGTTTGGTGCTGCAGCTGCACCGGGTTGGGGAGCAGCTGGAGA
AAATGAATGGGCAGCGCATGGATGAGCTCTTTGTGCTGATCCGGGATGGCTTCCTGCTCCCAACTGGCCT
CAGCTCCCTGGCCCAGCTGCTGCTGCTGGAGATCATTGAGTTCCGGGCGGCCGGCTGGAAGACAACGCCA
GCTGCCCACAAGTATTACTACAGCGAAGTCTCCGACTAG

Translation (222 aa):
MGEPSREEYKIQSFDAETQQLLKTALKDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQA
GQSVFRRGLLNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPD
SLSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGWKTTP
AAHKYYYSEVSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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