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Report for CCDS92410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92410.1 Public Homo sapiens 17 RBFOX3 24 110 108 CCDS HistoryNCBI Gene:146713Re-query CCDS DB by CCDS ID:92410.1Re-query CCDS DB by GeneID:146713See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000693108.1 ENSP00000510395.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000693108.1Link to Ensembl Protein Viewer:ENSP00000510395.1Re-query CCDS DB by Nucleotide ID:ENST00000693108Re-query CCDS DB by Protein ID:ENSP00000510395
Original member Current member NCBI NM_001350451.2 NP_001337380.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350451.2Link to Protein Sequence:NP_001337380.1Re-query CCDS DB by Nucleotide ID:NM_001350451Re-query CCDS DB by Protein ID:NP_001337380Link to BLAST:NP_001337380.1
Original member Current member NCBI NM_001385807.1 NP_001372736.1 Accepted alive Link to Nucleotide Sequence:NM_001385807.1Link to Protein Sequence:NP_001372736.1Re-query CCDS DB by Nucleotide ID:NM_001385807Re-query CCDS DB by Protein ID:NP_001372736Link to BLAST:NP_001372736.1
Original member Current member NCBI NM_001385808.1 NP_001372737.1 Accepted alive Link to Nucleotide Sequence:NM_001385808.1Link to Protein Sequence:NP_001372737.1Re-query CCDS DB by Nucleotide ID:NM_001385808Re-query CCDS DB by Protein ID:NP_001372737Link to BLAST:NP_001372737.1
Original member Current member NCBI NM_001385809.1 NP_001372738.1 Accepted alive Link to Nucleotide Sequence:NM_001385809.1Link to Protein Sequence:NP_001372738.1Re-query CCDS DB by Nucleotide ID:NM_001385809Re-query CCDS DB by Protein ID:NP_001372738Link to BLAST:NP_001372738.1
Original member Current member NCBI NM_001385810.1 NP_001372739.1 Accepted alive Link to Nucleotide Sequence:NM_001385810.1Link to Protein Sequence:NP_001372739.1Re-query CCDS DB by Nucleotide ID:NM_001385810Re-query CCDS DB by Protein ID:NP_001372739Link to BLAST:NP_001372739.1
Original member Current member NCBI NM_001385811.1 NP_001372740.1 Accepted alive Link to Nucleotide Sequence:NM_001385811.1Link to Protein Sequence:NP_001372740.1Re-query CCDS DB by Nucleotide ID:NM_001385811Re-query CCDS DB by Protein ID:NP_001372740Link to BLAST:NP_001372740.1
Original member Current member NCBI NM_001385812.1 NP_001372741.1 Accepted alive Link to Nucleotide Sequence:NM_001385812.1Link to Protein Sequence:NP_001372741.1Re-query CCDS DB by Nucleotide ID:NM_001385812Re-query CCDS DB by Protein ID:NP_001372741Link to BLAST:NP_001372741.1
Original member Current member NCBI NM_001385813.1 NP_001372742.1 Accepted alive Link to Nucleotide Sequence:NM_001385813.1Link to Protein Sequence:NP_001372742.1Re-query CCDS DB by Nucleotide ID:NM_001385813Re-query CCDS DB by Protein ID:NP_001372742Link to BLAST:NP_001372742.1
Original member Current member NCBI NM_001385814.1 NP_001372743.1 Accepted alive Link to Nucleotide Sequence:NM_001385814.1Link to Protein Sequence:NP_001372743.1Re-query CCDS DB by Nucleotide ID:NM_001385814Re-query CCDS DB by Protein ID:NP_001372743Link to BLAST:NP_001372743.1
Original member Current member NCBI NM_001385815.1 NP_001372744.1 Accepted alive Link to Nucleotide Sequence:NM_001385815.1Link to Protein Sequence:NP_001372744.1Re-query CCDS DB by Nucleotide ID:NM_001385815Re-query CCDS DB by Protein ID:NP_001372744Link to BLAST:NP_001372744.1
Original member Current member NCBI NM_001385816.1 NP_001372745.1 Accepted alive Link to Nucleotide Sequence:NM_001385816.1Link to Protein Sequence:NP_001372745.1Re-query CCDS DB by Nucleotide ID:NM_001385816Re-query CCDS DB by Protein ID:NP_001372745Link to BLAST:NP_001372745.1
Original member Current member NCBI NM_001385817.1 NP_001372746.1 Accepted alive Link to Nucleotide Sequence:NM_001385817.1Link to Protein Sequence:NP_001372746.1Re-query CCDS DB by Nucleotide ID:NM_001385817Re-query CCDS DB by Protein ID:NP_001372746Link to BLAST:NP_001372746.1
Original member Current member NCBI NM_001385818.1 NP_001372747.1 Accepted alive Link to Nucleotide Sequence:NM_001385818.1Link to Protein Sequence:NP_001372747.1Re-query CCDS DB by Nucleotide ID:NM_001385818Re-query CCDS DB by Protein ID:NP_001372747Link to BLAST:NP_001372747.1
Original member Current member NCBI NM_001385819.1 NP_001372748.1 Accepted alive Link to Nucleotide Sequence:NM_001385819.1Link to Protein Sequence:NP_001372748.1Re-query CCDS DB by Nucleotide ID:NM_001385819Re-query CCDS DB by Protein ID:NP_001372748Link to BLAST:NP_001372748.1
Original member Current member NCBI NM_001385820.1 NP_001372749.1 Accepted alive Link to Nucleotide Sequence:NM_001385820.1Link to Protein Sequence:NP_001372749.1Re-query CCDS DB by Nucleotide ID:NM_001385820Re-query CCDS DB by Protein ID:NP_001372749Link to BLAST:NP_001372749.1
Original member Current member NCBI NM_001385821.1 NP_001372750.1 Accepted alive Link to Nucleotide Sequence:NM_001385821.1Link to Protein Sequence:NP_001372750.1Re-query CCDS DB by Nucleotide ID:NM_001385821Re-query CCDS DB by Protein ID:NP_001372750Link to BLAST:NP_001372750.1

Chromosomal Locations for CCDS 92410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79090883 79090885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79094451 79094529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79095513 79095574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79096653 79096833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79097292 79097424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79097692 79097745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79101584 79101644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79103162 79103254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79104073 79104126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79106651 79106788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79115494 79115715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCCCAGCCCTACCCCCCCGCCCAGTACCCCCCTCCGCCACAGAACGGCATCCCTGCCGAGTACGCCC
CGCCCCCACCGCACCCCACGCAGGACTACTCCGGCCAGACCCCGGTCCCCACAGAGCATGGCATGACCCT
GTACACACCAGCACAGACCCACCCCGAGCAGCCAGGCTCCGAGGCCAGCACACAGCCCATCGCCGGGACC
CAGACAGTGCCGCAGACAGACGAGGCGGCACAGACGGACAGCCAGCCGCTCCACCCCTCCGACCCTACAG
AGAAGCAGCAGCCCAAGCGGCTACACGTCTCCAACATCCCCTTCCGGTTCAGGGACCCCGACTTGCGGCA
AATGTTCGGGCAATTCGGAAAAATTTTAGACGTGGAGATCATTTTTAACGAGCGGGGCTCCAAGGGTTTT
GGGTTTGTAACTTTTGAAACTAGCTCAGATGCTGACCGAGCCCGGGAGAAGCTGAATGGGACGATCGTAG
AGGGACGGAAAATTGAGGTCAATAATGCCACGGCCCGAGTGATGACCAACAAGAAGACGGGGAACCCCTA
CACCAACGGCTGGAAGCTAAATCCAGTGGTCGGCGCAGTCTACGGGCCTGAATTCTATGCAGTGACGGGG
TTCCCCTACCCCACCACCGGCACAGCCGTTGCCTACCGGGGCGCACATCTTCGGGGCCGGGGCCGGGCCG
TGTATAATACATTTCGGGCTGCGCCACCCCCACCCCCCATCCCGACTTACGGAGCGGCACTGGAGCAAAC
GCTTGTTAAAATGCCAGTCCCATGGGCGGGGCTGGCACCGTGCCCCCTCCCTCCTCAGCAGACACCGGAG
CCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTTTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGG
ATGGATTTTATGGTGCTGAGATTTATGGAGGCTACGCAGCCTACAGATACGCTCAGCCCGCTGCAGCGGC
GGCAGCCTACAGCGACAGTTACGGCAGAGTCTACGCAGCTGCCGACCCGTACCATCACACCATCGGGCCC
GCGGCGACCTACAGCATTGGAACCATGTGA

Translation (359 aa):
MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGT
QTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
GFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTG
FPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPE
PAYPTSPAFPPLSCPFASRVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGP
AATYSIGTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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