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Report for CCDS4002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4002.1 Public Homo sapiens 5 TAF9 24 110 108 CCDS HistoryNCBI Gene:6880Re-query CCDS DB by CCDS ID:4002.1Re-query CCDS DB by GeneID:6880See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217893.10 ENSP00000217893.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217893.10Link to Ensembl Protein Viewer:ENSP00000217893.7Re-query CCDS DB by Nucleotide ID:ENST00000217893Re-query CCDS DB by Protein ID:ENSP00000217893
Original member Current member EBI ENST00000328663.8 ENSP00000370193.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328663.8Link to Ensembl Protein Viewer:ENSP00000370193.1Re-query CCDS DB by Nucleotide ID:ENST00000328663Re-query CCDS DB by Protein ID:ENSP00000370193
Original member Current member EBI ENST00000506736.2 ENSP00000421873.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506736.2Link to Ensembl Protein Viewer:ENSP00000421873.1Re-query CCDS DB by Nucleotide ID:ENST00000506736Re-query CCDS DB by Protein ID:ENSP00000421873
Original member Current member EBI ENST00000512152.6 ENSP00000425798.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512152.6Link to Ensembl Protein Viewer:ENSP00000425798.4Re-query CCDS DB by Nucleotide ID:ENST00000512152Re-query CCDS DB by Protein ID:ENSP00000425798
Original member Current member EBI ENST00000503245.6 ENSP00000425944.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503245.6Link to Ensembl Protein Viewer:ENSP00000425944.4Re-query CCDS DB by Nucleotide ID:ENST00000503245Re-query CCDS DB by Protein ID:ENSP00000425944
Original member Current member EBI ENST00000504109.6 ENSP00000426283.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504109.6Link to Ensembl Protein Viewer:ENSP00000426283.2Re-query CCDS DB by Nucleotide ID:ENST00000504109Re-query CCDS DB by Protein ID:ENSP00000426283
Original member Current member EBI ENST00000509462.6 ENSP00000427343.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509462.6Link to Ensembl Protein Viewer:ENSP00000427343.4Re-query CCDS DB by Nucleotide ID:ENST00000509462Re-query CCDS DB by Protein ID:ENSP00000427343
Original member Current member EBI ENST00000508954.4 ENSP00000427617.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508954.4Link to Ensembl Protein Viewer:ENSP00000427617.4Re-query CCDS DB by Nucleotide ID:ENST00000508954Re-query CCDS DB by Protein ID:ENSP00000427617
Original member Current member EBI ENST00000689249.1 ENSP00000508645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689249.1Link to Ensembl Protein Viewer:ENSP00000508645.1Re-query CCDS DB by Nucleotide ID:ENST00000689249Re-query CCDS DB by Protein ID:ENSP00000508645
Original member Current member EBI ENST00000691515.1 ENSP00000509452.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691515.1Link to Ensembl Protein Viewer:ENSP00000509452.1Re-query CCDS DB by Nucleotide ID:ENST00000691515Re-query CCDS DB by Protein ID:ENSP00000509452
Original member Current member EBI ENST00000687836.1 ENSP00000509753.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687836.1Link to Ensembl Protein Viewer:ENSP00000509753.1Re-query CCDS DB by Nucleotide ID:ENST00000687836Re-query CCDS DB by Protein ID:ENSP00000509753
Original member Current member EBI ENST00000693414.1 ENSP00000509848.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693414.1Link to Ensembl Protein Viewer:ENSP00000509848.1Re-query CCDS DB by Nucleotide ID:ENST00000693414Re-query CCDS DB by Protein ID:ENSP00000509848
Original member Current member EBI ENST00000691076.1 ENSP00000509913.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691076.1Link to Ensembl Protein Viewer:ENSP00000509913.1Re-query CCDS DB by Nucleotide ID:ENST00000691076Re-query CCDS DB by Protein ID:ENSP00000509913
Original member Current member EBI ENST00000691555.1 ENSP00000510101.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691555.1Link to Ensembl Protein Viewer:ENSP00000510101.1Re-query CCDS DB by Nucleotide ID:ENST00000691555Re-query CCDS DB by Protein ID:ENSP00000510101
Original member Current member EBI ENST00000688968.1 ENSP00000510364.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688968.1Link to Ensembl Protein Viewer:ENSP00000510364.1Re-query CCDS DB by Nucleotide ID:ENST00000688968Re-query CCDS DB by Protein ID:ENSP00000510364
Original member Current member EBI ENST00000690749.1 ENSP00000510605.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690749.1Link to Ensembl Protein Viewer:ENSP00000510605.1Re-query CCDS DB by Nucleotide ID:ENST00000690749Re-query CCDS DB by Protein ID:ENSP00000510605
Original member Current member NCBI NM_001015892.2 NP_001015892.1 Accepted alive Link to Nucleotide Sequence:NM_001015892.2Link to Protein Sequence:NP_001015892.1Re-query CCDS DB by Nucleotide ID:NM_001015892Re-query CCDS DB by Protein ID:NP_001015892Link to BLAST:NP_001015892.1
Original member Current member NCBI NM_003187.5 NP_003178.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003187.5Link to Protein Sequence:NP_003178.1Re-query CCDS DB by Nucleotide ID:NM_003187Re-query CCDS DB by Protein ID:NP_003178Link to BLAST:NP_003178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015892.1 264 Q16594 264 100% 0 0
NP_003178.1 264 Q16594 264 100% 0 0

Chromosomal Locations for CCDS 4002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69364943 69365737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGAGTCTGGCAAGACGGCTTCTCCCAAGAGCATGCCGAAAGATGCACAGATGATGGCACAAATCCTGA
AGGATATGGGGATTACAGAATATGAGCCAAGAGTTATAAATCAGATGTTGGAGTTTGCCTTCCGATATGT
GACCACAATTCTAGATGATGCAAAAATTTATTCAAGCCATGCTAAGAAAGCTACTGTTGATGCAGATGAT
GTGCGATTGGCAATCCAGTGCCGCGCTGATCAGTCTTTTACCTCTCCTCCCCCAAGAGATTTTTTATTAG
ATATTGCAAGGCAAAGAAATCAAACCCCTTTGCCATTGATCAAGCCATATTCAGGTCCTAGGTTGCCACC
TGATAGATACTGCTTAACAGCTCCAAACTATAGGCTGAAATCTTTACAGAAAAAGGCATCAACTTCTGCG
GGAAGAATAACAGTCCCGCGGTTAAGTGTTGGTTCAGTTACTAGCAGACCAAGTACTCCCACACTAGGCA
CACCAACCCCACAGACCATGTCTGTTTCAACTAAAGTAGGGACTCCCATGTCCCTCACAGGTCAAAGGTT
TACAGTACAGATGCCTACTTCTCAGTCTCCAGCTGTAAAAGCTTCAATTCCTGCAACCTCAGCAGTTCAG
AATGTTCTGATTAATCCATCATTAATCGGGTCCAAAAACATTCTTATTACCACTAATATGATGTCATCAC
AAAATACTGCCAATGAATCATCAAATGCATTGAAAAGAAAACGTGAAGATGATGATGATGACGATGATGA
TGATGATGACTATGATAATCTGTAA

Translation (264 aa):
MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD
VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSA
GRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQ
NVLINPSLIGSKNILITTNMMSSQNTANESSNALKRKREDDDDDDDDDDDYDNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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