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Report for CCDS13454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13454.1 Public Homo sapiens 20 TFAP2C 24 110 108 CCDS HistoryNCBI Gene:7022Re-query CCDS DB by CCDS ID:13454.1Re-query CCDS DB by GeneID:7022See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13454.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000201031.3 ENSP00000201031.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000201031.3Link to Ensembl Protein Viewer:ENSP00000201031.2Re-query CCDS DB by Nucleotide ID:ENST00000201031Re-query CCDS DB by Protein ID:ENSP00000201031
Original member Current member NCBI NM_003222.4 NP_003213.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003222.4Link to Protein Sequence:NP_003213.1Re-query CCDS DB by Nucleotide ID:NM_003222Re-query CCDS DB by Protein ID:NP_003213Link to BLAST:NP_003213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003213.1 450 Q92754-1 450 100% 0 0

Chromosomal Locations for CCDS 13454.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 56629545 56629592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56631205 56631690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56631805 56631856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56633353 56633569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56634150 56634268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56636610 56636754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56637728 56638013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGTTGTGGAAAATAACCGATAATGTCAAGTACGAAGAGGACTGCGAGGATCGCCACGACGGGAGCAGCA
ATGGGAATCCGCGGGTCCCCCACCTCTCCTCCGCCGGGCAGCACCTCTACAGCCCCGCGCCACCCCTCTC
CCACACTGGAGTCGCCGAATATCAGCCGCCACCCTACTTTCCCCCTCCCTACCAGCAGCTGGCCTACTCC
CAGTCGGCCGACCCCTACTCGCATCTGGGGGAAGCGTACGCCGCCGCCATCAACCCCCTGCACCAGCCGG
CGCCCACAGGCAGCCAGCAGCAGGCCTGGCCCGGCCGCCAGAGCCAGGAGGGAGCGGGGCTGCCCTCGCA
CCACGGGCGCCCGGCCGGCCTACTGCCCCACCTCTCCGGGCTGGAGGCGGGCGCGGTGAGCGCCCGCAGG
GATGCCTACCGCCGCTCCGACCTGCTGCTGCCCCACGCACACGCCCTGGATGCCGCGGGCCTGGCCGAGA
ACCTGGGGCTCCACGACATGCCTCACCAGATGGACGAGGTGCAGAATGTCGACGACCAGCACCTGTTGCT
GCACGATCAGACAGTCATTCGCAAAGGTCCCATTTCCATGACCAAGAACCCTCTGAACCTCCCCTGTCAG
AAGGAGCTGGTGGGGGCCGTAATGAACCCCACTGAGGTCTTCTGCTCAGTCCCTGGAAGATTGTCGCTCC
TCAGCTCTACGTCTAAATACAAAGTGACAGTGGCTGAAGTACAGAGGCGACTGTCCCCACCTGAATGCTT
AAATGCCTCGTTACTGGGAGGTGTTCTCAGAAGAGCCAAATCGAAAAATGGAGGCCGGTCCTTGCGGGAG
AAGTTGGACAAGATTGGGTTGAATCTTCCGGCCGGGAGGCGGAAAGCCGCTCATGTGACTCTCCTGACAT
CCTTAGTAGAAGGTGAAGCTGTTCATTTGGCTAGGGACTTTGCCTATGTCTGTGAAGCCGAATTTCCTAG
TAAACCAGTGGCAGAATATTTAACCAGACCTCATCTTGGAGGACGAAATGAGATGGCAGCTAGGAAGAAC
ATGCTATTGGCGGCCCAGCAACTGTGTAAAGAATTCACAGAACTTCTCAGCCAAGACCGGACACCCCATG
GGACCAGCAGGCTCGCCCCAGTCTTGGAGACGAACATACAGAACTGCTTGTCTCATTTCAGCCTGATTAC
CCACGGGTTTGGCAGCCAGGCCATCTGTGCCGCGGTGTCTGCCCTGCAGAACTACATCAAAGAAGCCCTG
ATTGTCATAGACAAATCCTACATGAACCCTGGAGACCAGAGTCCAGCTGATTCTAACAAAACCCTGGAGA
AAATGGAGAAACACAGGAAATAA

Translation (450 aa):
MLWKITDNVKYEEDCEDRHDGSSNGNPRVPHLSSAGQHLYSPAPPLSHTGVAEYQPPPYFPPPYQQLAYS
QSADPYSHLGEAYAAAINPLHQPAPTGSQQQAWPGRQSQEGAGLPSHHGRPAGLLPHLSGLEAGAVSARR
DAYRRSDLLLPHAHALDAAGLAENLGLHDMPHQMDEVQNVDDQHLLLHDQTVIRKGPISMTKNPLNLPCQ
KELVGAVMNPTEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLRE
KLDKIGLNLPAGRRKAAHVTLLTSLVEGEAVHLARDFAYVCEAEFPSKPVAEYLTRPHLGGRNEMAARKN
MLLAAQQLCKEFTELLSQDRTPHGTSRLAPVLETNIQNCLSHFSLITHGFGSQAICAAVSALQNYIKEAL
IVIDKSYMNPGDQSPADSNKTLEKMEKHRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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