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Report for CCDS48209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48209.1 Public Homo sapiens Y DAZ1 24 110 108 CCDS HistoryNCBI Gene:1617Re-query CCDS DB by CCDS ID:48209.1Re-query CCDS DB by GeneID:1617See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405239.6 ENSP00000384573.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405239.6Link to Ensembl Protein Viewer:ENSP00000384573.1Re-query CCDS DB by Nucleotide ID:ENST00000405239Re-query CCDS DB by Protein ID:ENSP00000384573
Original member Current member NCBI NM_004081.7 NP_004072.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004081.7Link to Protein Sequence:NP_004072.3Re-query CCDS DB by Nucleotide ID:NM_004081Re-query CCDS DB by Protein ID:NP_004072Link to BLAST:NP_004072.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004072.3 744 Q9NQZ3-1 744 100% 0 0

Chromosomal Locations for CCDS 48209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 23135210 23135273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23139847 23139881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23140626 23140697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23143011 23143082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23152797 23152868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23155174 23155245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23157570 23157641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23159953 23160024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23162349 23162420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23164740 23164811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23167185 23167256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23168657 23168796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23168886 23168949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23169386 23169437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23169998 23170089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23170364 23170510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23179497 23179636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23179726 23179789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23180226 23180277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23180838 23180929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23181204 23181350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23190345 23190484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23190574 23190637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23191074 23191125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23191686 23191777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23192052 23192198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 23198798 23198800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAGTCTTCATCAG
CTGCAGCTAGCCAAGGCTGGGTGTTACCAGAAGGCAAAATCGTGCCAAACACTGTTTTTGTTGGTGGAAT
TGATGCTAGGATGGATGAAACTGAGATTGGAAGCTGCTTTGGTAGATACGGTTCAGTGAAAGAAGTGAAG
ATAATCACGAATCGAACTGGTGTGTCCAAAGGCTATGGATTTGTTTCGTTTGTTAATGACGTGGATGTCC
AGAAGATAGTAGGATCACAGATACATTTCCATGGTAAAAAGCTGAAGCTGGGCCCTGCAATCAGGAAACA
AAAGTTATGTGCTCGTCATGTGCAGCCACGTCCTTTGGTAGTTAATCCTCCTCCTCCACCACAGTTTCAG
AACGTCTGGCGGAATCCAAACACTGAAACCTACCTGCAGCCCCAAATCACGCCGAATCCTGTAACTCAGC
ACGTTCAGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAGTCTTC
ATCAGCTGCAGCTAGCCAAGGCTGGGTGTTACCAGAAGGCAAAATCGTGCCAAACACTGTTTTTGTTGGT
GGAATTGATGCTAGGATGGATGAAACTGAGATTGGAAGCTGCTTTGGTAGATACGGTTCAGTGAAAGAAG
TGAAGATAATCACGAATCGAACTGGTGTGTCCAAAGGCTATGGATTTGTTTCGTTTGTTAATGACGTGGA
TGTCCAGAAGATAGTAGGATCACAGATACATTTCCATGGTAAAAAGCTGAAGCTGGGCCCTGCAATCAGG
AAACAAAAGTTATGTGCTCGTCATGTGCAGCCACGTCCTTTGGTAGTTAATCCTCCTCCTCCACCACAGT
TTCAGAACGTCTGGCGGAATCCAAACACTGAAACCTACCTGCAGCCCCAAATCACGCCGAATCCTGTAAC
TCAGCACGTTCAGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAG
TCTTCATCAGCTGCAGCTAGCCAAGGCTGGGTGTTACCAGAAGGCAAAATCGTGCCAAACACTGTTTTTG
TTGGTGGAATTGATGCTAGGATGGATGAAACTGAGATTGGAAGCTGCTTTGGTAGATACGGTTCAGTGAA
AGAAGTGAAGATAATCACGAATCGAACTGGTGTGTCCAAAGGCTATGGATTTGTTTCGTTTGTTAATGAC
GTGGATGTCCAGAAGATAGTAGGATCACAGATACATTTCCATGGTAAAAAGCTGAAGCTGGGCCCTGCAA
TCAGGAAACAAAAGTTATGTGCTCGTCATGTGCAGCCACGTCCTTTGGTAGTTAATCCTCCTCCTCCACC
ACAGTTTCAGAACGTCTGGCGGAATCCAAACACTGAAACCTACCTGCAGCCCCAAATCACGCCGAATCCT
GTAACTCAGCACGTTCAGGCTTACTCTGCTTATCCACATTCACCAGGTCAGGTCATCACTGGATGTCAGT
TGCTTGTATATAATTATCAGGAATATCCTACTTATCCCGATTCAGCATTTCAGGTCACCACTGGATATCA
GTTGCCTGTATATAATTATCAGCCATTTCCTGCTTATCCAAGATCACCATTTCAGGTCACTGCTGGATAT
CAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCCAAATTCACCATTTCAAGTCGCCACTGGAT
ATCAGTTCCCTGTATACAATTATCAGCCATTTCCTGCTTATCCAAGTTCACCATTTCAGGTCACTGCTGG
ATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCCAAATTCACCATTTCAAGTCGCCACT
GGATATCAGTTCCCTGTATACAATTATCAGGCATTTCCTGCTTATCCAAATTCACCAGTTCAGGTCACCA
CTGGATATCAGTTGCCTGTATACAATTATCAGGCATTTCCTGCTTATCCAAGTTCACCATTTCAGGTCAC
CACTGGATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCCAAATTCAGCAGTTCAGGTC
ACCACTGGATATCAGTTCCATGTATACAATTACCAGATGCCACCGCAGTGCCCTGTTGGGGAGCAAAGGA
GAAATCTGTGGACCGAAGCATACAAATGGTGGTATCTTGTCTGTTTAATCCAGAGAAGAGACTGA

Translation (744 aa):
MSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK
IITNRTGVSKGYGFVSFVNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQ
NVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVG
GIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIHFHGKKLKLGPAIR
KQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQ
SSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND
VDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNP
VTQHVQAYSAYPHSPGQVITGCQLLVYNYQEYPTYPDSAFQVTTGYQLPVYNYQPFPAYPRSPFQVTAGY
QLPVYNYQAFPAYPNSPFQVATGYQFPVYNYQPFPAYPSSPFQVTAGYQLPVYNYQAFPAYPNSPFQVAT
GYQFPVYNYQAFPAYPNSPVQVTTGYQLPVYNYQAFPAYPSSPFQVTTGYQLPVYNYQAFPAYPNSAVQV
TTGYQFHVYNYQMPPQCPVGEQRRNLWTEAYKWWYLVCLIQRRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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