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Report for CCDS9378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9378.1 Public Homo sapiens 13 MTRF1 24 110 108 CCDS HistoryNCBI Gene:9617Re-query CCDS DB by CCDS ID:9378.1Re-query CCDS DB by GeneID:9617See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379477.5 ENSP00000368790.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379477.5Link to Ensembl Protein Viewer:ENSP00000368790.1Re-query CCDS DB by Nucleotide ID:ENST00000379477Re-query CCDS DB by Protein ID:ENSP00000368790
Original member Current member EBI ENST00000379480.9 ENSP00000368793.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379480.9Link to Ensembl Protein Viewer:ENSP00000368793.3Re-query CCDS DB by Nucleotide ID:ENST00000379480Re-query CCDS DB by Protein ID:ENSP00000368793
Original member Current member NCBI NM_001354073.1 NP_001341002.1 Accepted alive Link to Nucleotide Sequence:NM_001354073.1Link to Protein Sequence:NP_001341002.1Re-query CCDS DB by Nucleotide ID:NM_001354073Re-query CCDS DB by Protein ID:NP_001341002Link to BLAST:NP_001341002.1
Original member Current member NCBI NM_001354074.1 NP_001341003.1 Accepted alive Link to Nucleotide Sequence:NM_001354074.1Link to Protein Sequence:NP_001341003.1Re-query CCDS DB by Nucleotide ID:NM_001354074Re-query CCDS DB by Protein ID:NP_001341003Link to BLAST:NP_001341003.1
Original member Current member NCBI NM_001354076.1 NP_001341005.1 Accepted alive Link to Nucleotide Sequence:NM_001354076.1Link to Protein Sequence:NP_001341005.1Re-query CCDS DB by Nucleotide ID:NM_001354076Re-query CCDS DB by Protein ID:NP_001341005Link to BLAST:NP_001341005.1
Original member Current member NCBI NM_004294.4 NP_004285.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004294.4Link to Protein Sequence:NP_004285.2Re-query CCDS DB by Nucleotide ID:NM_004294Re-query CCDS DB by Protein ID:NP_004285Link to BLAST:NP_004285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341002.1 445 O75570-1 445 100% 0 0
NP_001341003.1 445 O75570-1 445 100% 0 0
NP_001341005.1 445 O75570-1 445 100% 0 0
NP_004285.2 445 O75570-1 445 100% 0 0

Chromosomal Locations for CCDS 9378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41217115 41217228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41223256 41223354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41226432 41226568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41233890 41234007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41240261 41240433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41252645 41252752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41252949 41253030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41254529 41254620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41260493 41260907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAATCGTCACCTGTGTGTTTGGCTTTTTAGACATCCATCTCTTAATGGTTACCTCCAGTGTCACATCC
AGCTCCATTCTCATCAATTTAGACAGATACATCTTGATACAAGGCTGCAAGTTTTTAGACAAAACAGGAA
TTGCATTCTTCATCTGTTAAGTAAGAATTGGTCCAGGAGATATTGCCATCAAGACACCAAGATGCTCTGG
AAGCATAAAGCACTACAGAAATATATGGAGAACCTGAGTAAGGAGTACCAAACACTTGAGCAATGTCTGC
AGCATATCCCTGTGAATGAGGAAAACCGAAGGTCCTTGAACAGAAGGCATGCTGAGTTGGCACCTCTTGC
AGCCATTTACCAAGAAATTCAGGAGACTGAACAAGCAATTGAAGAATTAGAATCAATGTGTAAAAGCCTA
AATAAACAAGATGAAAAGCAGTTACAAGAACTTGCACTGGAAGAAAGGCAAACCATTGATCAAAAAATCA
ACATGTTGTACAATGAGCTTTTCCAGAGCCTTGTGCCAAAGGAGAAATATGACAAAAATGATGTTATTTT
AGAGGTGACAGCTGGAAGGACTACTGGAGGTGACATCTGCCAACAATTTACCCGAGAAATATTTGACATG
TACCAGAATTATTCGTGCTATAAACACTGGCAATTTGAACTTCTGAATTATACACCAGCAGATTATGGTG
GACTACATCATGCAGCCGCCCGAATTTCCGGTGACGGTGTCTATAAGCATTTGAAGTATGAGGGTGGGAT
TCACCGAGTTCAGCGCATCCCCGAGGTGGGCCTGTCCTCAAGGATGCAGCGCATTCACACAGGAACGATG
TCGGTTATTGTCCTTCCTCAGCCAGATGAGGTGGATGTGAAATTGGACCCCAAGGATTTGCGAATAGATA
CATTTCGAGCCAAAGGAGCAGGAGGGCAGCATGTTAATAAAACTGATAGTGCCGTCAGACTTGTCCACAT
CCCCACAGGGCTAGTAGTAGAATGCCAACAAGAAAGATCACAGATAAAAAATAAAGAAATAGCCTTTCGT
GTGTTGAGAGCTAGACTCTACCAGCAGATTATTGAGAAAGACAAGCGTCAGCAACAAAGTGCTAGAAAAC
TGCAGGTGGGAACAAGAGCCCAGTCAGAGCGAATTCGGACATATAATTTCACCCAGGATAGAGTCAGTGA
CCACAGGATAGCATATGAAGTTCGTGATATTAAGGAATTTTTATGTGGTGGGAAGGGCCTGGATCAGCTA
ATTCAGAGACTGCTTCAATCAGCAGATGAAGAAGCCATTGCTGAACTTTTGGATGAACACCTTAAATCAG
CAAAATAA

Translation (445 aa):
MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRRYCHQDTKMLW
KHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMCKSL
NKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDM
YQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTM
SVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFR
VLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQL
IQRLLQSADEEAIAELLDEHLKSAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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