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Report for CCDS9316.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9316.1 |
Public |
Homo sapiens |
13 |
RNF6 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:6049](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9316.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:6049](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 9316.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000346166.7 |
ENSP00000342121.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000346166.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000342121.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000346166](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000342121](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000381570.7 |
ENSP00000370982.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000381570.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000370982.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000381570](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000370982](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000381588.9 |
ENSP00000371000.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000381588.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000371000.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000381588](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000371000](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_005977.4 |
NP_005968.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_005977.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_005968.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_005977](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_005968](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_005968.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_183043.3 |
NP_898864.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_183043.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_898864.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_183043](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_898864](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_898864.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_183044.3 |
NP_898865.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_183044.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_898865.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_183044](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_898865](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_898865.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9316.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2058 nt): ATGAATCAGTCTAGATCGAGATCAGATGGTGGCAGTGAAGAAACCTTACCTCAAGACCATAATCATCATG AAAATGAGAGAAGATGGCAGCAAGAGCGTCTCCACAGAGAAGAGGCCTATTATCAGTTTATTAATGAACT CAATGATGAAGATTATCGGCTTATGAGAGACCATAATCTTTTAGGCACCCCTGGAGAAATAACATCAGAA GAACTGCAACAGCGGTTAGATGGCGTCAAGGAACAACTAGCATCTCAGCCTGACTTGAGAGATGGAACGA ATTACAGAGACTCAGAAGTCCCTAGAGAAAGTTCACATGAAGATTCTCTTCTAGAATGGTTGAACACCTT TCGGCGCACAGGAAATGCAACTCGAAGTGGACAAAATGGGAACCAAACTTGGAGAGCTGTGAGTCGAACA AACCCGAACAATGGAGAGTTTCGGTTTAGTTTGGAAATCCACGTAAATCATGAAAATAGAGGATTTGAAA TTCATGGAGAAGATTATACAGACATTCCACTTTCAGATAGTAACAGAGATCATACTGCAAATAGGCAACA AAGGTCAACTAGTCCTGTGGCTAGGCGAACAAGAAGCCAAACCTCAGTGAATTTCAATGGTAGTAGTTCC AACATTCCAAGGACTAGGCTTGCTTCAAGGGGGCAAAATCCAGCTGAAGGATCTTTCTCAACATTGGGAA GGTTAAGAAATGGAATTGGGGGAGCAGCTGGCATTCCTCGAGCTAACGCTTCACGCACTAATTTCAGTAG TCACACAAACCAATCAGGTGGTAGTGAACTCAGGCAAAGGGAGGGGCAACGGTTTGGAGCAGCACATGTT TGGGAAAATGGGGCTAGAAGTAATGTTACAGTGAGGAATACAAACCAAAGATTAGAGCCAATAAGATTAC GATCTACTTCCAATAGTCGAAGCCGTTCACCAATTCAGAGACAGAGTGGCACTGTTTATCATAATTCCCA AAGGGAAAGTAGACCAGTACAGCAAACCACTAGAAGATCTGTTAGGAGGAGAGGTAGAACTCGAGTCTTT TTAGAGCAAGATAGAGAACGAGAACGCAGAGGTACTGCATATACCCCATTCTCTAATTCAAGGCTTGTGT CAAGAATAACAGTAGAAGAAGGAGAAGAATCCAGCAGATCCTCAACTGCTGTACGACGACATCCAACAAT CACACTGGACCTTCAAGTGAGAAGGATCCGTCCTGGAGAAAATAGAGATCGGGATAGTATTGCAAATAGA ACTCGATCCAGAGTAGGGCTAGCAGAAAATACAGTCACTATTGAAAGCAATAGTGGGGGCTTTCGCCGAA CCATTTCTCGTTTAGAGCGGTCAGGTATTCGAACCTATGTTAGTACCATAACAGTTCCTCTTCGTAGGAT TTCTGAGAATGAGCTTGTTGAGCCATCATCAGTGGCTCTTCGGTCAATTTTAAGGCAGATCATGACTGGG TTTGGAGAACTGAGTTCTCTAATGGAGGCCGATTCTGAGTCAGAACTTCAAAGAAATGGCCAGCATTTAC CAGACATGCACTCAGAACTGAGTAACTTAGGTACAGATAACAACAGGAGCCAGCACAGGGAAGGTTCCTC TCAAGACAGGCAGGCCCAAGGAGACAGCACTGAAATGCATGGTGAAAACGAGACCACCCAGCCTCATACT CGAAACAGTGACAGTAGGGGTGGCAGGCAGTTGCGAAATCCAAACAATTTAGTTGAAACTGGAACACTAC CCATTCTTCGCCTTGCTCACTTTTTTTTACTAAATGAAAGTGATGATGATGATCGAATACGTGGTTTAAC CAAAGAGCAGATTGACAATCTTTCCACCAGGCACTATGAGCATAACAGTATTGATAGTGAACTAGGTAAA ATCTGTAGTGTTTGTATTAGTGACTATGTAACTGGAAACAAGCTCAGGCAATTACCTTGCATGCATGAAT TTCACATTCATTGTATTGACCGATGGCTCTCAGAGAATTGCACTTGTCCGATCTGTCGGCAGCCTGTTTT AGGGTCTAACATAGCAAACAATGGGTAA
Translation (685 aa): MNQSRSRSDGGSEETLPQDHNHHENERRWQQERLHREEAYYQFINELNDEDYRLMRDHNLLGTPGEITSE ELQQRLDGVKEQLASQPDLRDGTNYRDSEVPRESSHEDSLLEWLNTFRRTGNATRSGQNGNQTWRAVSRT NPNNGEFRFSLEIHVNHENRGFEIHGEDYTDIPLSDSNRDHTANRQQRSTSPVARRTRSQTSVNFNGSSS NIPRTRLASRGQNPAEGSFSTLGRLRNGIGGAAGIPRANASRTNFSSHTNQSGGSELRQREGQRFGAAHV WENGARSNVTVRNTNQRLEPIRLRSTSNSRSRSPIQRQSGTVYHNSQRESRPVQQTTRRSVRRRGRTRVF LEQDRERERRGTAYTPFSNSRLVSRITVEEGEESSRSSTAVRRHPTITLDLQVRRIRPGENRDRDSIANR TRSRVGLAENTVTIESNSGGFRRTISRLERSGIRTYVSTITVPLRRISENELVEPSSVALRSILRQIMTG FGELSSLMEADSESELQRNGQHLPDMHSELSNLGTDNNRSQHREGSSQDRQAQGDSTEMHGENETTQPHT RNSDSRGGRQLRNPNNLVETGTLPILRLAHFFLLNESDDDDRIRGLTKEQIDNLSTRHYEHNSIDSELGK ICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVLGSNIANNG
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