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Report for CCDS5621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5621.1 Public Homo sapiens 7 MTERF1 24 110 108 CCDS HistoryNCBI Gene:7978Re-query CCDS DB by CCDS ID:5621.1Re-query CCDS DB by GeneID:7978See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5621.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351870.8 ENSP00000248643.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000351870.8Link to Ensembl Protein Viewer:ENSP00000248643.3Re-query CCDS DB by Nucleotide ID:ENST00000351870Re-query CCDS DB by Protein ID:ENSP00000248643
Original member Current member NCBI NM_006980.5 NP_008911.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006980.5Link to Protein Sequence:NP_008911.1Re-query CCDS DB by Nucleotide ID:NM_006980Re-query CCDS DB by Protein ID:NP_008911Link to BLAST:NP_008911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008911.1 399 Q99551 399 100% 0 0

Chromosomal Locations for CCDS 5621.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 91873594 91874764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 91880055 91880083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGCAGAGCCTTTCCTTAGGACAAACAAGCATTTCAAAAGGTTTGAACTACCTAACCATTATGGCACCAG
GAAACCTCTGGCATATGAGAAATAACTTTCTCTTTGGTTCAAGATGTTGGATGACTCGATTTTCAGCAGA
AAACATCTTCAAATCAGTTTCATTTAGGCTTTTTGGTGTGAAGTGTCATAATACAGACAGTGAGCCTTTG
AAAAATGAGGACCTACTGAAAAACTTACTTACTATGGGAGTAGATATTGACATGGCAAGGAAACGACAGC
CTGGAGTTTTTCATAGGATGATTACCAATGAGCAGGACCTGAAGATGTTCCTTCTTTCCAAAGGAGCTAG
CAAAGAAGTGATCGCTAGCATCATATCAAGATATCCACGAGCAATAACACGTACTCCCGAGAATCTTTCA
AAACGGTGGGATCTGTGGAGAAAGATTGTGACATCAGACCTTGAAATTGTAAATATTTTGGAACGTTCTC
CTGAATCCTTTTTTCGGTCCAATAACAACCTAAACTTAGAGAATAATATAAAGTTCCTCTACTCAGTTGG
ATTGACCCGTAAATGCCTTTGTCGATTGTTGACCAATGCCCCTCGTACCTTCTCCAATAGTCTTGATCTG
AATAAACAGATGGTTGAATTTTTGCAGGCAGCCGGTTTGTCATTGGGTCACAATGATCCCGCAGATTTTG
TCAGAAAGATAATTTTTAAAAACCCTTTTATCTTAATTCAGAGCACCAAGCGGGTGAAAGCTAACATTGA
ATTCTTACGGTCAACTTTCAATTTGAACAGTGAGGAACTGCTGGTTCTGATATGTGGTCCAGGAGCTGAA
ATCCTAGACCTTTCCAATGACTATGCCAGAAGAAGCTACGCAAACATCAAAGAGAAGCTGTTTTCTCTTG
GATGTACTGAAGAAGAGGTACAGAAGTTTGTCTTAAGCTATCCAGATGTGATCTTCTTGGCAGAGAAAAA
GTTTAATGATAAAATAGACTGCCTCATGGAAGAAAACATTAGCATTTCACAAATAATCGAAAATCCTCGG
GTTCTGGATTCAAGCATAAGTACTTTAAAAAGTCGAATCAAAGAATTGGTAAATGCTGGCTGTAACTTGA
GTACTTTAAACATCACTCTTCTATCTTGGAGTAAAAAAAGATATGAAGCTAAATTGAAAAAGTTAAGCAG
ATTTGCCTAA

Translation (399 aa):
MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPL
KNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLS
KRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL
NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAE
ILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPR
VLDSSISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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