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Report for CCDS12837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12837.1 Public Homo sapiens 19 ZNF175 24 110 108 CCDS HistoryNCBI Gene:7728Re-query CCDS DB by CCDS ID:12837.1Re-query CCDS DB by GeneID:7728See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262259.7 ENSP00000262259.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262259.7Link to Ensembl Protein Viewer:ENSP00000262259.2Re-query CCDS DB by Nucleotide ID:ENST00000262259Re-query CCDS DB by Protein ID:ENSP00000262259
Original member Current member NCBI NM_007147.4 NP_009078.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007147.4Link to Protein Sequence:NP_009078.1Re-query CCDS DB by Nucleotide ID:NM_007147Re-query CCDS DB by Protein ID:NP_009078Link to BLAST:NP_009078.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009078.1 711 Q9Y473 711 100% 0 0

Chromosomal Locations for CCDS 12837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51573330 51573401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51581391 51581517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51581787 51581882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51586627 51588467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGCCTGCTGATGTGAATTTATCCCAGAAGCCTCAGGTCCTGGGTCCAGAGAAGCAGGATGGATCTTGCG
AGGCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGC
CCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGGGGTATCACATT
CCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCAC
ATCAGAGGTGTCAAGAAAGGGAGTTTGGGCTTGAAATCCCACAAAAGGAGATTTCTAAGAAAGCTTCATT
TCAAAAGGATATGGTAGGTGAGTTCACAAGAGATGGTTCATGGTGTTCCATTTTAGAAGAACTGAGGCTG
GATGCTGACCGCACAAAGAAAGATGAGCAAAATCAAATTCAACCCATGAGTCACAGTGCTTTCTTCAACA
AGAAAACATTGAACACAGAAAGCAATTGTGAATATAAGGACCCTGGGAAAATGATTCGCACGAGGCCCCA
CCTTGCTTCTTCACAGAAACAACCTCAGAAATGTTGCTTATTTACAGAAAGTTTGAAGCTGAACCTAGAA
GTGAACGGTCAGAATGAAAGCAATGACACAGAACAGCTTGATGACGTTGTTGGGTCTGGTCAGCTATTCA
GCCATAGCTCTTCTGATGCCTGCAGCAAGAATATTCATACAGGAGAGACATTTTGCAAAGGTAACCAGTG
TAGAAAAGTCTGTGGCCATAAACAGTCACTCAAGCAACATCAAATTCATACTCAGAAGAAACCAGATGGA
TGTTCTGAATGTGGGGGGAGCTTCACCCAGAAGTCACACCTCTTTGCCCAACAGAGAATTCATAGTGTAG
GAAACCTCCATGAATGTGGCAAATGTGGAAAAGCCTTCATGCCACAACTAAAACTCAGTGTATATCTGAC
AGATCATACAGGTGATATACCCTGTATATGCAAGGAATGTGGGAAGGTCTTTATTCAGAGATCAGAATTG
CTTACGCACCAGAAAACACACACTAGAAAGAAGCCCTATAAATGCCATGACTGTGGAAAAGCCTTTTTCC
AGATGTTATCTCTCTTCAGACATCAGAGAACTCACAGTAGAGAAAAACTCTATGAATGCAGTGAATGTGG
CAAAGGCTTCTCCCAAAACTCAACCCTCATTATACATCAGAAAATTCATACTGGTGAGAGACAGTATGCA
TGCAGTGAATGTGGGAAAGCCTTTACCCAGAAGTCAACACTCAGCTTGCACCAGAGAATCCACTCAGGGC
AGAAGTCCTATGTGTGTATCGAATGCGGGCAGGCCTTCATCCAGAAGGCACACCTGATTGTCCATCAAAG
AAGCCACACAGGAGAAAAACCTTATCAGTGCCACAACTGTGGGAAATCCTTCATTTCCAAGTCACAGCTT
GATATACATCATCGAATTCATACAGGGGAGAAACCTTATGAATGCAGTGACTGTGGAAAAACCTTCACCC
AAAAGTCACACCTGAATATACACCAGAAAATTCATACTGGAGAAAGACACCATGTATGCAGTGAATGCGG
GAAAGCCTTCAACCAGAAGTCAATACTCAGCATGCATCAGAGAATTCACACCGGAGAGAAGCCTTACAAA
TGCAGTGAATGTGGGAAAGCCTTCACTTCTAAGTCTCAATTCAAAGAGCATCAGCGAATTCACACGGGTG
AGAAACCCTATGTGTGCACTGAATGTGGGAAGGCCTTCAACGGCAGGTCAAATTTCCATAAACATCAAAT
AACTCACACTAGAGAGAGGCCTTTTGTCTGTTACAAATGTGGGAAGGCTTTTGTCCAGAAATCAGAGTTG
ATTACCCATCAAAGAACTCACATGGGAGAGAAACCCTATGAATGCCTTGACTGTGGGAAATCGTTCAGTA
AGAAACCACAACTCAAGGTGCATCAGCGAATTCACACGGGAGAAAGACCTTATGTGTGTTCTGAATGTGG
AAAGGCCTTCAACAACAGGTCAAACTTCAATAAACACCAAACAACTCATACCAGAGACAAATCTTACAAA
TGCAGTTATTCTGTGAAAGGCTTTACCAAGCAATGA

Translation (711 aa):
MPADVNLSQKPQVLGPEKQDGSCEASVSFEDVTVDFSREEWQQLDPAQRCLYRDVMLELYSHLFAVGYHI
PNPEVIFRMLKEKEPRVEEAEVSHQRCQEREFGLEIPQKEISKKASFQKDMVGEFTRDGSWCSILEELRL
DADRTKKDEQNQIQPMSHSAFFNKKTLNTESNCEYKDPGKMIRTRPHLASSQKQPQKCCLFTESLKLNLE
VNGQNESNDTEQLDDVVGSGQLFSHSSSDACSKNIHTGETFCKGNQCRKVCGHKQSLKQHQIHTQKKPDG
CSECGGSFTQKSHLFAQQRIHSVGNLHECGKCGKAFMPQLKLSVYLTDHTGDIPCICKECGKVFIQRSEL
LTHQKTHTRKKPYKCHDCGKAFFQMLSLFRHQRTHSREKLYECSECGKGFSQNSTLIIHQKIHTGERQYA
CSECGKAFTQKSTLSLHQRIHSGQKSYVCIECGQAFIQKAHLIVHQRSHTGEKPYQCHNCGKSFISKSQL
DIHHRIHTGEKPYECSDCGKTFTQKSHLNIHQKIHTGERHHVCSECGKAFNQKSILSMHQRIHTGEKPYK
CSECGKAFTSKSQFKEHQRIHTGEKPYVCTECGKAFNGRSNFHKHQITHTRERPFVCYKCGKAFVQKSEL
ITHQRTHMGEKPYECLDCGKSFSKKPQLKVHQRIHTGERPYVCSECGKAFNNRSNFNKHQTTHTRDKSYK
CSYSVKGFTKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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