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Report for CCDS619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
619.1 Public Homo sapiens 1 L1TD1 24 110 108 CCDS HistoryNCBI Gene:54596Re-query CCDS DB by CCDS ID:619.1Re-query CCDS DB by GeneID:54596See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 619.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000498273.2 ENSP00000419901.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000498273.2Link to Ensembl Protein Viewer:ENSP00000419901.1Re-query CCDS DB by Nucleotide ID:ENST00000498273Re-query CCDS DB by Protein ID:ENSP00000419901
Original member Current member NCBI NM_001164835.2 NP_001158307.1 Accepted alive Link to Nucleotide Sequence:NM_001164835.2Link to Protein Sequence:NP_001158307.1Re-query CCDS DB by Nucleotide ID:NM_001164835Re-query CCDS DB by Protein ID:NP_001158307Link to BLAST:NP_001158307.1
Original member Current member NCBI NM_019079.5 NP_061952.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019079.5Link to Protein Sequence:NP_061952.3Re-query CCDS DB by Nucleotide ID:NM_019079Re-query CCDS DB by Protein ID:NP_061952Link to BLAST:NP_061952.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158307.1 865 Q5T7N2 865 100% 0 0
NP_061952.3 865 Q5T7N2 865 100% 0 0

Chromosomal Locations for CCDS 619.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 62206629 62207636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62209783 62211372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGTCTGATGTATCTACTAGTGTACAATCAAAATTTGCTAGACTTGCAAAGAAAAAGGAAAATATCACCT
ATATGAAAAGAGAGCAGTTAACAGAAACTGATAAGGACATAGCTCCGGTATTAGATTTAAAATGCAAGGA
CGTATCAGCAATTATGAATAAGTTTAAGGTCTTAATGGAAATTCAAGACCTGATGTTTGAGGAGATGAGG
GAAACTCTTAAAAATGACCTAAAAGCAGTTTTAGGGGGAAAAGCTACAATACCTGAGGTAAAGAATTCAG
AGAACTCCAGTAGTAGGACAGAGTTTCAGCAAATAATCAATTTAGCATTACAAAAAACAGGGATGGTAGG
GAAAATAGAAGGAGAAAACTCTAAAATAGGTGATGATAATGAAAATTTAACCTTTAAATTAGAAGTAAAT
GAGCTGAGTGGTAAATTAGACAACACTAACGAATACAATAGTAATGATGGTAAGAAATTACCCCAGGGTG
AATCACGAAGTTACGAAGTCATGGGAAGTATGGAAGAAACCTTATGCAATATAGATGACAGAGATGGAAA
TCGCAATGTCCATTTAGAATTTACAGAAAGAGAGAGTAGGAAGGATGGAGAGGATGAATTTGTCAAAGAA
ATGAGAGAGGAAAGAAAATTTCAGAAATTGAAGAATAAAGAGGAGGTTTTAAAAGCCTCCAGAGAAGAAA
AAGTGTTGATGGATGAAGGAGCAGTACTTACCCTGGTAGCCGACCTTTCATCAGCAACACTGGATATTAG
TAAGCAATGGAGTAATGTCTTCAACATTCTGAGAGAAAATGATTTTGAACCTAAATTTCTGTGTGAAGTT
AAATTAGCATTTAAATGTGATGGTGAAATAAAGACATTTTCAGATCTGCAAAGCCTTAGAAAATTTGCCA
GCCAAAAATCTTCTGTGAAAGAATTACTGAAAGATGTACTCCCACAAAAGGAAGAAATAAATCAAGGAGG
AAGAAAATATGGAATTCAAGAAAAAAGGGATAAAACCCTAATAGACTCAAAGCATAGAGCTGGAGAAATA
ACCAGTGATGGCTTGAGCTTCCTATTTCTTAAAGAAGTAAAAGTTGCTAAGCCAGAGGAGATGAAAAACT
TAGAGACTCAAGAGGAAGAGTTTTCCGAGCTAGAGGAGCTGGATGAAGAGGCCTCAGGGATGGAGGATGA
TGAAGATACCTCAGGGCTGGAGGAGGAGGAGGAAGAGCCCTCAGGGCTGGAGGAGGAAGAAGAAGAAGAG
GCTTCAGGGTTGGAGGAGGATGAGGCCTCAGGGCTAGAGGAGGAAGAGGAACAGACTTCAGAACAGGACT
CAACCTTTCAGGGTCATACTTTGGTAGATGCAAAGCATGAAGTTGAGATAACCAGTGATGGCATGGAAAC
TACTTTCATTGACTCTGTAGAGGATTCTGAATCAGAGGAGGAAGAAGAAGGAAAGAGCTCTGAAACAGGA
AAGGTAAAGACTACCTCCCTGACTGAGAAAAAAGCCTCACGTAGACAAAAAGAAATTCCCTTTAGTTATT
TGGTTGGGGACTCTGGGAAGAAAAAGTTGGTGAAACACCAGGTGGTGCACAAAACCCAGGAGGAAGAGGA
AACAGCTGTGCCCACAAGTCAAGGAACTGGCACACCCTGTCTGACCTTATGTTTGGCCTCTCCCTCAAAG
TCACTAGAGATGAGTCATGATGAGCATAAAAAGCATTCACATACAAATTTGAGTATTTCAACAGGAGTCA
CCAAACTTAAGAAAACAGAAGAAAAGAAACACAGAACTCTGCACACAGAAGAACTAACATCCAAAGAAGC
AGACTTAACAGAGGAAACAGAAGAAAACTTGAGAAGTAGTGTGATTAATAGCATCAGAGAGATAAAAGAG
GAGATTGGAAATTTGAAAAGTTCCCATTCAGGTGTCTTGGAAATTGAAAATTCAGTAGATGATCTGAGTA
GCAGAATGGACATACTTGAAGAAAGAATAGACAGTCTAGAAGATCAAATTGAAGAATTCTCTAAGGATAC
AATGCAAATGACCAAACAGATAATTAGTAAAGAAAGGCAAAGAGATATAGAGGAGAGATCTAGAAGTTGC
AACATTCGTTTGATAGGAATTCCAGAAAAGGAGAGTTATGAGAATAGGGCAGAGGACATAATTAAAGAAA
TAATTGATGAAAACTTTGCAGAACTAAAGAAAGGTTCAAGTCTTGAGATTGTCAGTGCTTGTCGAGTACC
TAGTAAAATTGATGAAAAGAGACTGACTCCTAGACACATCTTGGTGAAATTTTGGAATTCTAGTGATAAA
GAGAAAATAATAAGGGCTTCTAGAGAGAGAAGAGAAATTACCTACCAAGGAACAAGAATCAGGTTGACAG
CAGACTTATCACTGGACACACTGGATGCTAGAAGTAAATGGAGCAATGTCTTCAAAGTTCTGCTGGAAAA
AGGCTTTAATCCTAGAATCCTATATCCAGCCAAAATGGCATTTGATTTTAGGGGTAAAACAAAGGTATTT
CTTAGTATTGAAGAATTTAGAGATTATGTTTTGCATATGCCCACCTTGAGAGAATTACTGGGGAATAATA
TACCTTAG

Translation (865 aa):
MSDVSTSVQSKFARLAKKKENITYMKREQLTETDKDIAPVLDLKCKDVSAIMNKFKVLMEIQDLMFEEMR
ETLKNDLKAVLGGKATIPEVKNSENSSSRTEFQQIINLALQKTGMVGKIEGENSKIGDDNENLTFKLEVN
ELSGKLDNTNEYNSNDGKKLPQGESRSYEVMGSMEETLCNIDDRDGNRNVHLEFTERESRKDGEDEFVKE
MREERKFQKLKNKEEVLKASREEKVLMDEGAVLTLVADLSSATLDISKQWSNVFNILRENDFEPKFLCEV
KLAFKCDGEIKTFSDLQSLRKFASQKSSVKELLKDVLPQKEEINQGGRKYGIQEKRDKTLIDSKHRAGEI
TSDGLSFLFLKEVKVAKPEEMKNLETQEEEFSELEELDEEASGMEDDEDTSGLEEEEEEPSGLEEEEEEE
ASGLEEDEASGLEEEEEQTSEQDSTFQGHTLVDAKHEVEITSDGMETTFIDSVEDSESEEEEEGKSSETG
KVKTTSLTEKKASRRQKEIPFSYLVGDSGKKKLVKHQVVHKTQEEEETAVPTSQGTGTPCLTLCLASPSK
SLEMSHDEHKKHSHTNLSISTGVTKLKKTEEKKHRTLHTEELTSKEADLTEETEENLRSSVINSIREIKE
EIGNLKSSHSGVLEIENSVDDLSSRMDILEERIDSLEDQIEEFSKDTMQMTKQIISKERQRDIEERSRSC
NIRLIGIPEKESYENRAEDIIKEIIDENFAELKKGSSLEIVSACRVPSKIDEKRLTPRHILVKFWNSSDK
EKIIRASRERREITYQGTRIRLTADLSLDTLDARSKWSNVFKVLLEKGFNPRILYPAKMAFDFRGKTKVF
LSIEEFRDYVLHMPTLRELLGNNIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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