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Report for CCDS45920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45920.1 Public Homo sapiens 19 CACTIN 24 110 108 CCDS HistoryNCBI Gene:58509Re-query CCDS DB by CCDS ID:45920.1Re-query CCDS DB by GeneID:58509See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221899.7 ENSP00000221899.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000221899.7Link to Ensembl Protein Viewer:ENSP00000221899.4Re-query CCDS DB by Nucleotide ID:ENST00000221899Re-query CCDS DB by Protein ID:ENSP00000221899
Original member Current member EBI ENST00000248420.9 ENSP00000248420.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000248420.9Link to Ensembl Protein Viewer:ENSP00000248420.5Re-query CCDS DB by Nucleotide ID:ENST00000248420Re-query CCDS DB by Protein ID:ENSP00000248420
Original member Current member EBI ENST00000429344.7 ENSP00000415078.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429344.7Link to Ensembl Protein Viewer:ENSP00000415078.1Re-query CCDS DB by Nucleotide ID:ENST00000429344Re-query CCDS DB by Protein ID:ENSP00000415078
Original member Current member EBI ENST00000585942.5 ENSP00000465751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585942.5Link to Ensembl Protein Viewer:ENSP00000465751.1Re-query CCDS DB by Nucleotide ID:ENST00000585942Re-query CCDS DB by Protein ID:ENSP00000465751
Original member Current member NCBI NM_001080543.2 NP_001074012.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080543.2Link to Protein Sequence:NP_001074012.1Re-query CCDS DB by Nucleotide ID:NM_001080543Re-query CCDS DB by Protein ID:NP_001074012Link to BLAST:NP_001074012.1
Original member Current member NCBI NM_021231.2 NP_067054.1 Accepted alive Link to Nucleotide Sequence:NM_021231.2Link to Protein Sequence:NP_067054.1Re-query CCDS DB by Nucleotide ID:NM_021231Re-query CCDS DB by Protein ID:NP_067054Link to BLAST:NP_067054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074012.1 758 Q8WUQ7-1 758 100% 0 0
NP_067054.1 758 Q8WUQ7-1 758 100% 0 0

Chromosomal Locations for CCDS 45920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3611923 3612413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3613058 3613365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3613464 3613586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3614397 3614589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3618875 3618989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3619080 3619242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3620127 3620272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3620707 3620802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3623688 3624162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3626596 3626762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGGGTCGGGACACACGCTCGCGCTCGCGGTCCGCGGGTCGCCGGGGCCGAAGGCGGCAGAGTCAGAGCG
GG
AGCCGAAGTCGGAGCAGGAGCCATGGGCGGCGAAACCGACGGCGCCGGGAGGACGAGGGACGGCGCAG
A
CGGAGGCGGCGGAGCCGGGAGCGCAGGTCAGATTCAGAGGAAGAGCGGTGGCAGCGCTCAGGGATGCGA
AGC
CGGAGCCCCCCGCGGCCCAAGTGGCACTCAAGAGATGGGTCCTCTCAGTCGGACTCAGGAGAGGAGC
AG
TCACGGGGCCAGTGGGCTCGCCGGCGACGGCGCGCACGCTCGTGGTCTCCTAGCTCCTCAGCATCCAG
C
TCCGCGTCTCCAGGGCGATCCCAGAGCCCCCGGGCGGCCGCGGCTGCCCTGAGCCAGCAGCAGAGCCTG
CAG
GAGCGGCTGCGGCTGCGGGAGGAGCGGAAGCAGCAGGAGGAGCTGATGAAGGCCTTCGAGACGCCCG
AG
GAGAAGCGCGCACGGCGGCTGGCCAAGAAGGAGGCCAAGGAGCGCAAGAAGCGGGAGAAGATGGGCTG
G
GGTGAGGAGTACATGGGCTACACCAACACCGACAACCCCTTCGGAGACAACAACCTGCTGGGCACCTTC
ATC
TGGAATAAGGCCCTGGAGAAGAAGGGGATCAGCCACCTGGAGGAGAAGGAGCTGAAGGAGCGGAACA
AG
AGGATCCAGGAGGACAACCGGCTGGAGCTGCAGAAGGTGAAGCAGCTGCGGCTGGAGCGGGAGCGGGA
G
AAGGCCATGCGCGAGCAGGAGCTGGAGATGCTGCAGCGCGAGAAGGAGGCAGAGCACTTCAAGACATGG
GAG
GAGCAGGAGGACAACTTCCACCTCCAGCAGGCCAAGCTGCGTTCCAAGATCCGCATCCGGGACGGGC
GG
GCCAAGCCCATCGACCTGCTGGCCAAGTACATCAGCGCTGAGGATGACGATCTGGCCGTGGAGATGCA
T
GAGCCCTACACGTTCCTCAACGGCCTCACCGTGGCCGACATGGAGGACCTGCTGGAGGATATCCAGGTC
TAC
ATGGAGCTGGAGCAGGGCAAGAACGCCGACTTCTGGCGGGACATGACCACCATCACCGAGGACGAGA
TC
TCCAAGCTCCGCAAGCTGGAGGCCTCGGGCAAGGGGCCAGGTGAGCGCCGCGAGGGGGTCAACGCCTC
C
GTCAGCTCTGATGTGCAGTCGGTGTTCAAGGGGAAGACATACAACCAGCTGCAGGTCATCTTCCAGGGC
ATC
GAGGGCAAAATCCGCGCTGGTGGCCCCAACCTGGACATGGGCTACTGGGAGAGCCTCCTGCAGCAGC
TT
CGTGCCCACATGGCACGGGCCCGGCTGCGTGAGCGCCACCAGGACGTGCTGCGGCAGAAGCTGTACAA
A
CTGAAGCAGGAGCAGGGCGTGGAGAGCGAGCCGCTGTTCCCCATCCTCAAGCAGGAGCCCCAGTCCCCC
AGC
CGCAGCCTGGAGCCTGAGGACGCGGCGCCCACCCCGCCCGGGCCCTCCTCGGAGGGCGGCCCCGCGG
AG
GCCGAGGTGGACGGCGCGACCCCGACAGAGGGCGACGGCGACGGGGACGGTGAGGGCGAGGGCGAGGG
C
GAGGCGGTGCTCATGGAGGAGGACCTGATCCAGCAGAGCCTGGACGACTACGACGCCGGCAGGTACAGC
CCG
CGGCTGCTCACGGCGCACGAGCTGCCACTGGACGCGCACGTGCTGGAACCGGATGAGGACCTGCAGC
GC
CTGCAGCTCTCGCGCCAGCAGCTCCAGGTCACGGGAGACGCCAGCGAGAGCGCCGAGGACATCTTCTT
C
CGGCGGGCCAAGGAGGGCATGGGCCAGGACGAGGCGCAGTTCAGCGTGGAGATGCCACTCACCGGCAAG
GCC
TACCTGTGGGCCGACAAGTACCGGCCACGCAAGCCGCGCTTCTTCAACCGCGTGCACACGGGCTTCG
AG
TGGAACAAGTACAACCAGACGCACTACGACTTTGACAACCCACCGCCCAAGATCGTGCAGGGATACAA
G
TTCAACATCTTCTACCCCGACCTCATCGACAAGCGCTCCACGCCCGAGTACTTCCTGGAGGCCTGCGCC
GAC
AACAAGGATTTCGCCATCCTGCGCTTCCACGCGGGGCCGCCCTACGAGGACATCGCTTTCAAGATCG
TC
AACCGCGAGTGGGAATACTCGCACCGCCACGGCTTCCGCTGCCAGTTTGCCAACGGCATCTTCCAGCT
G
TGGTTTCACTTCAAGCGCTACCGCTATCGGCGGTGA


Translation (758 aa):
MGRDTRSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSEEERWQRSGMR
S
RSPPRPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSL
Q
ERLRLREERKQQEELMKAFETPEEKRARRLAKKEAKERKKREKMGWGEEYMGYTNTDNPFGDNNLLGTF
I
WNK
ALEKKGISHLEEKELKERNKRIQEDNRLELQKVKQLRLEREREKAMREQELEMLQREKEAEHFKTW
E
EQEDNFHLQQAKL
RSKIRIRDGRAKPIDLLAKYISAEDDDLAVEMHEPYTFLNGLTVADMEDLLEDIQV
Y
MELEQGKNADFWRDMTTITEDEISKLRKLEASGKGP
GERREGVNASVSSDVQSVFKGKTYNQLQVIFQG
I
EGKIRAGGPNLDMGYWESLLQQLRAHMARA
RLRERHQDVLRQKLYKLKQEQGVESEPLFPILKQEPQSP
S
R
SLEPEDAAPTPPGPSSEGGPAEAEVDGATPTEGDGDGDGEGEGEGEAVLMEEDLIQQSLDDYDAGRYS
P
RLLTAHELPLDAHVLEPDEDLQRLQLSRQQLQVT
GDASESAEDIFFRRAKEGMGQDEAQFSVEMPLTGK
A
YLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPEYFLEACA
D
NKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFKRYRYRR




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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