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Report for CCDS11720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11720.1 Public Homo sapiens 17 SLC25A19 24 110 108 CCDS HistoryNCBI Gene:60386Re-query CCDS DB by CCDS ID:11720.1Re-query CCDS DB by GeneID:60386See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320362.7 ENSP00000319574.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320362.7Link to Ensembl Protein Viewer:ENSP00000319574.3Re-query CCDS DB by Nucleotide ID:ENST00000320362Re-query CCDS DB by Protein ID:ENSP00000319574
Original member Current member EBI ENST00000402418.7 ENSP00000385312.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402418.7Link to Ensembl Protein Viewer:ENSP00000385312.3Re-query CCDS DB by Nucleotide ID:ENST00000402418Re-query CCDS DB by Protein ID:ENSP00000385312
Original member Current member EBI ENST00000416858.7 ENSP00000397818.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000416858.7Link to Ensembl Protein Viewer:ENSP00000397818.2Re-query CCDS DB by Nucleotide ID:ENST00000416858Re-query CCDS DB by Protein ID:ENSP00000397818
Original member Current member EBI ENST00000442286.6 ENSP00000402202.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442286.6Link to Ensembl Protein Viewer:ENSP00000402202.2Re-query CCDS DB by Nucleotide ID:ENST00000442286Re-query CCDS DB by Protein ID:ENSP00000402202
Original member Current member EBI ENST00000580994.5 ENSP00000463795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580994.5Link to Ensembl Protein Viewer:ENSP00000463795.1Re-query CCDS DB by Nucleotide ID:ENST00000580994Re-query CCDS DB by Protein ID:ENSP00000463795
Original member Current member NCBI NM_001126121.2 NP_001119593.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001126121.2Link to Protein Sequence:NP_001119593.1Re-query CCDS DB by Nucleotide ID:NM_001126121Re-query CCDS DB by Protein ID:NP_001119593Link to BLAST:NP_001119593.1
Original member Current member NCBI NM_001126122.2 NP_001119594.1 Accepted alive Link to Nucleotide Sequence:NM_001126122.2Link to Protein Sequence:NP_001119594.1Re-query CCDS DB by Nucleotide ID:NM_001126122Re-query CCDS DB by Protein ID:NP_001119594Link to BLAST:NP_001119594.1
Original member Current member NCBI NM_021734.5 NP_068380.3 Accepted alive Link to Nucleotide Sequence:NM_021734.5Link to Protein Sequence:NP_068380.3Re-query CCDS DB by Nucleotide ID:NM_021734Re-query CCDS DB by Protein ID:NP_068380Link to BLAST:NP_068380.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119593.1 320 Q9HC21-1 320 100% 0 0
NP_001119594.1 320 Q9HC21-1 320 100% 0 0
NP_068380.3 320 Q9HC21-1 320 100% 0 0

Chromosomal Locations for CCDS 11720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75273451 75273639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75277353 75277483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75278152 75278335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75283423 75283593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75286304 75286459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75286633 75286764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGTTGGCTATGACCCCAAACCAGATGGCAGGAATAACACCAAGTTCCAGGTGGCAGTGGCTGGGTCTG
TGTCTGGACTTGTTACTCGGGCGCTGATCAGTCCCTTCGACGTCATCAAGATCCGTTTCCAGCTTCAGCA
TGAGCGCCTGTCTCGCAGTGACCCCAGCGCAAAGTACCATGGCATCCTCCAGGCCTCTAGGCAGATTCTG
CAGGAGGAGGGTCCGACAGCTTTCTGGAAAGGACACGTCCCAGCTCAGATTCTCTCCATAGGCTATGGAG
CTGTCCAATTCTTGTCATTTGAAATGCTGACGGAGCTGGTCCACAGAGGCAGCGTGTATGACGCCCGGGA
ATTCTCAGTGCACTTTGTATGTGGTGGCCTGGCTGCCTGTATGGCCACCCTCACTGTGCACCCCGTGGAT
GTTCTGCGCACCCGCTTTGCAGCTCAGGGTGAGCCCAAGGTCTATAATACGCTGCGCCACGCCGTGGGGA
CCATGTATAGGAGCGAAGGCCCCCAGGTTTTCTACAAAGGCTTGGCTCCCACCTTGATCGCCATCTTCCC
CTACGCCGGGCTGCAGTTCTCTTGCTACAGCTCCTTGAAGCACCTGTACAAGTGGGCCATACCAGCCGAA
GGAAAGAAAAATGAGAACCTCCAAAACCTGCTTTGTGGCAGTGGAGCTGGTGTCATCAGCAAGACCCTGA
CATATCCGCTGGACCTCTTCAAGAAGCGGCTACAGGTTGGAGGGTTTGAGCATGCCAGAGCTGCCTTTGG
CCAGGTACGGAGATACAAGGGCCTCATGGACTGTGCCAAGCAGGTGCTGCAAAAGGAAGGCGCCCTGGGC
TTCTTCAAGGGCCTGTCCCCCAGCTTGCTGAAGGCTGCCCTCTCCACAGGCTTCATGTTCTTCTCGTATG
AATTCTTCTGTAATGTCTTCCACTGCATGAACAGGACAGCCAGCCAGCGCTGA

Translation (320 aa):
MVGYDPKPDGRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQIL
QEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVD
VLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAE
GKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALG
FFKGLSPSLLKAALSTGFMFFSYEFFCNVFHCMNRTASQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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