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Report for CCDS16500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16500.1 Public Mus musculus 2 Elp4 23 108 98 CCDS HistoryNCBI Gene:77766Re-query CCDS DB by CCDS ID:16500.1Re-query CCDS DB by GeneID:77766See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122965.7 ENSMUSP00000116575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122965.7Link to Ensembl Protein Viewer:ENSMUSP00000116575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122965Re-query CCDS DB by Protein ID:ENSMUSP00000116575
Original member Current member NCBI NM_023876.4 NP_076365.2 Accepted alive Link to Nucleotide Sequence:NM_023876.4Link to Protein Sequence:NP_076365.2Re-query CCDS DB by Nucleotide ID:NM_023876Re-query CCDS DB by Protein ID:NP_076365Link to BLAST:NP_076365.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076365.2 422 Q9ER73 422 100% 0 0

Chromosomal Locations for CCDS 16500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 105702730 105702861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105792216 105792322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105794517 105794625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105809266 105809454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105814266 105814350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105832131 105832270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105842232 105842360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105865959 105866080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105896902 105896937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105904269 105904488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGCGGCGGCAGACACTTGCGGCGCGGGTACCCTCAGCTCCCGGTCTGTGGCGTCCGAGGCGGGTCAGG
GCGGCACCTCTAGTTTCCAGAGGAAGGGCAAGGCCTCTGGGGGCCCCGGAGGGGGCCCTCGGCTGCTGTC
CATTGCTGGCACGCGACCGTCGGTGCGGAATGGACAACTGCTGGTGTCAACCGGGCTCCCAGCCCTGGAC
CAGCTCTTAGGTGGAGGGTTAGCTGTTGGAACACTTCTTCTGATTGAAGAGGATAAATATAATATCTATT
CACCTTTGCTCTTCAAGTATTTCATGGCAGAAGGAATCATCAATGGGCATACTCTGTTGGTTGCATCTGC
CAAAGAAAATCCTGCCAAAATTTTACAGGAACTCCCTGCACCACTACTTGATGATAATAGTAAAAAGGAG
CTTGAAGATGTACACAGTGCTAAAACCCCAGAGCCTAATGTCAACATGAAGATAGCCTGGCGGTACCAGT
TACAACCCAAGATGGAGGTGGGACCGGTCTCGTCGTCACGATTTGGTCACTATTATGATTTATCAAAAAG
GATTCCTTGGGAGCTACTACAGAGTTCAAAGTGGCATGGATTCTTCCTTCCAGAACACATCTCTCCAGAT
CTTAAAGGAGAATCCTGTTTTTTGTCCTGTGGCTACATGAGGCTGCTTGAGTTCATTCAGAAGAGCGTTT
ATGCTGAAGGATTTGATGGAGCTAATCCCCAGAAAAAACAGAAAAACATTTTAAGAATAGGAATTCAGAA
CCTTGGCTCACCGTTATGGGGAGATGACATTTGCTGTAAAGAAAACTGTGACAACAATCACAGGCTTACC
AAGTTCCTCTACATTCTTCGTGGTCTTCTAAGATCCTCACTGTCCGCCTGCATCATCACGATGCCAGCAC
ATCTTGTCCAGAATAAATCAATTACTACTCGTGTGAGAAATTTGTCAGATACAGTAGTTGGTCTGGAATC
CTTTATTGGTTCAGAGAGAGAGACTAACCCATTGTATAAGGATTATCATGGTTTGATCCATATACGGAAG
ATTCCTCGGCTTAATAACTTGACTTGTGATGAATCGGATGTCAAAGACTTAGCTTTTAAGTTAAAAAGGA
AGCTGTTCACCATTGAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGGGCCGTTCAAGCAAACA
GGATCTGGCAGCATCCACCGCGCGGCTGGGTGCAGGCTGTAGCTCCATGGCCGAAGGCAAGAAGCACCTG
GACTTCTAG

Translation (422 aa):
MAAADTCGAGTLSSRSVASEAGQGGTSSFQRKGKASGGPGGGPRLLSIAGTRPSVRNGQLLVSTGLPALD
QLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFMAEGIINGHTLLVASAKENPAKILQELPAPLLDDNSKKE
LEDVHSAKTPEPNVNMKIAWRYQLQPKMEVGPVSSSRFGHYYDLSKRIPWELLQSSKWHGFFLPEHISPD
LKGESCFLSCGYMRLLEFIQKSVYAEGFDGANPQKKQKNILRIGIQNLGSPLWGDDICCKENCDNNHRLT
KFLYILRGLLRSSLSACIITMPAHLVQNKSITTRVRNLSDTVVGLESFIGSERETNPLYKDYHGLIHIRK
IPRLNNLTCDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVGRSSKQDLAASTARLGAGCSSMAEGKKHL
DF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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