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Report for CCDS10168.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10168.2 Public Homo sapiens 15 SLTM 24 110 108 CCDS HistoryNCBI Gene:79811Re-query CCDS DB by CCDS ID:10168.2Re-query CCDS DB by GeneID:79811See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10168.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380516.7 ENSP00000369887.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380516.7Link to Ensembl Protein Viewer:ENSP00000369887.2Re-query CCDS DB by Nucleotide ID:ENST00000380516Re-query CCDS DB by Protein ID:ENSP00000369887
Original member Current member NCBI NM_024755.4 NP_079031.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024755.4Link to Protein Sequence:NP_079031.2Re-query CCDS DB by Nucleotide ID:NM_024755Re-query CCDS DB by Protein ID:NP_079031Link to BLAST:NP_079031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079031.2 1034 Q9NWH9-1 1034 100% 0 0

Chromosomal Locations for CCDS 10168.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58879999 58880107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58883626 58883786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58886975 58887119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58887226 58887540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58888385 58888555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58889430 58889554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58890281 58890461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58892897 58893060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58893279 58893364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58893821 58893987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58894090 58894193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58894433 58894582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58897115 58897233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58898803 58898852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58899469 58899937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58901260 58901287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58912563 58912610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58913499 58913696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58916935 58916999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58932356 58932443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58933404 58933565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGGCTGCCGCTACCGGTGCGGTGGCAGCCTCGGCCGCCTCGGGTCAGGCGGAAGGTAAAAAGATCACCG
ATCTGCGGGTCATCGATCTGAAGTCCGAGCTGAAGCGGCGGAACTTAGACATCACCGGAGTCAAGACCGT
GCTCATCTCCCGACTCAAGCAGGCTATTGAAGAGGAAGGAGGCGATCCAGATAATATTGAATTAACTGTT
TCAACTGATACTCCAAACAAGAAACCAACTAAAGGCAAAGGTAAAAAACATGAAGCAGATGAGTTGAGTG
GAGATGCTTCTGTGGAAGATGATGCTTTTATCAAGGACTGTGAATTGGAGAATCAAGAGGCACATGAGCA
AGATGGAAATGATGAACTAAAGGACTCTGAAGAATTTGGTGAAAATGAAGAAGAAAATGTGCATTCCAAG
GAGTTACTCTCTGCAGAAGAAAACAAGAGAGCTCATGAATTAATAGAGGCAGAAGGAATAGAAGATATAG
AAAAAGAGGACATCGAAAGTCAGGAAATTGAAGCTCAAGAAGGTGAAGATGATACCTTTCTAACAGCCCA
AGATGGTGAGGAAGAAGAAAATGAGAAAGATATAGCAGGTTCTGGTGATGGTACACAAGAAGTATCTAAA
CCTCTTCCTTCAGAAGGGAGCCTAGCTGAGGCTGATCACACAGCTCATGAAGAGATGGAAGCTCATACGA
CTGTGAAAGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTT
TGATGGTGATGACCTCCTAGAAACAGGTAAAAATGTGAAAATTACAGATTCTGAAGCAAGTAAGCCAAAA
GATGGGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAAGCAAGGATTATGAGATGAATGCGAACCATA
AAGATGGTAAGAAGGAAGACTGCGTGAAGGGTGACCCTGTCGAGAAGGAAGCCAGAGAAAGTTCTAAGAA
AGCAGAATCTGGAGACAAAGAAAAGGATACTTTGAAGAAAGGGCCCTCGTCTACTGGGGCCTCTGGTCAA
GCAAAGAGCTCTTCAAAGGAATCTAAAGACAGCAAGACATCATCTAAAGATGACAAAGGAAGTACAAGTA
GTACTAGTGGTAGCAGTGGAAGCTCAACTAAAAATATCTGGGTTAGTGGACTTTCATCTAATACCAAAGC
TGCTGATTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTCTGAGTGCAAAAGTAGTTACAAATGCTCGA
AGTCCTGGGGCAAAATGCTATGGCATTGTAACTATGTCTTCAAGCACAGAGGTGTCCAGGTGTATTGCAC
ATCTTCATCGCACTGAGCTGCATGGACAGCTGATTTCTGTTGAAAAAGTAAAAGGTGATCCCTCTAAGAA
AGAAATGAAGAAAGAAAATGATGAAAAGAGTAGTTCAAGAAGTTCTGGAGATAAAAAAAATACGAGTGAT
AGAAGTAGCAAGACACAAGCCTCTGTCAAAAAAGAAGAGAAAAGATCGTCTGAGAAATCTGAAAAAAAAG
AAAGCAAGGATACTAAGAAAATAGAAGGTAAAGATGAGAAGAATGATAATGGAGCAAGTGGCCAAACATC
AGAATCGATTAAAAAAAGTGAAGAAAAGAAGCGAATAAGTTCCAAGAGTCCAGGACATATGGTAATACTA
GACCAAACTAAAGGAGATCATTGTAGACCATCAAGAAGAGGAAGATATGAGAAAATTCATGGAAGAAGTA
AGGAAAAGGAGAGAGCTAGTCTAGATAAAAAAAGAGATAAAGACTACAGAAGGAAAGAGATCTTGCCTTT
TGAAAAGATGAAGGAACAAAGGTTGAGAGAACATTTAGTTCGTTTTGAAAGGCTGCGACGAGCAATGGAA
CTTCGAAGACGAAGAGAGATTGCAGAGAGAGAGCGTCGAGAGCGAGAACGCATTAGAATAATTCGTGAAC
GGGAAGAACGGGAACGCTTACAGAGAGAGAGAGAGCGCCTAGAAATTGAAAGGCAAAAACTAGAGAGAGA
GAGAATGGAACGCGAACGCTTGGAAAGGGAACGCATTCGTATTGAACAGGAACGTCGTAAGGAAGCTGAA
CGGATTGCTCGAGAAAGAGAGGAACTCAGAAGGCAACAACAGCAGCTTCGTTATGAACAAGAAAAAAGGA
ATTCCTTGAAACGCCCACGTGATGTAGATCATAGGCGAGATGATCCTTACTGGAGCGAGAATAAAAAGTT
GTCTCTAGATACAGATGCACGATTTGGCCATGGATCCGACTACTCTCGCCAACAGAACAGATTTAATGAC
TTTGATCACCGAGAGAGGGGCAGGTTTCCTGAGAGTTCAGCAGTACAGTCTTCATCTTTTGAAAGGCGGG
ATCGCTTTGTTGGTCAAAGTGAGGGGAAAAAAGCACGACCTACTGCACGAAGGGAAGATCCAAGCTTCGA
AAGATATCCCAAAAATTTCAGTGACTCCAGAAGAAATGAGCCTCCACCACCAAGAAATGAACTTAGAGAA
TCAGACAGGCGAGAAGTACGAGGGGAGCGAGACGAAAGGAGAACGGTGATTATTCATGACAGGCCTGATA
TCACTCATCCTAGACATCCTCGAGAGGCAGGGCCCAATCCTTCCAGACCCACCAGCTGGAAAAGTGAAGG
AAGCATGTCCACTGACAAACGGGAAACAAGAGTTGAAAGGCCAGAACGATCTGGGAGAGAAGTATCAGGG
CACAGTGTGAGAGGCGCTCCCCCTGGGAATCGTAGCAGCGCTTCGGGGTACGGGAGCAGAGAGGGAGACA
GAGGAGTCATCACAGACCGAGGAGGTGGATCACAGCACTATCCTGAGGAGCGACATGTGGTTGAACGCCA
TGGACGGGACACAAGCGGACCAAGGAAAGAGTGGCATGGTCCACCCTCTCAAGGGCCTAGCTATCATGAT
ACGAGGCGAATGGGTGACGGCCGGGCAGGAGCAGGCATGATAACCCAACATTCAAGTAACGCATCCCCAA
TTAATAGAATTGTACAAATCAGTGGCAATTCCATGCCAAGAGGAAGTGGCTCCGGATTTAAGCCATTTAA
GGGTGGACCTCCGCGACGATTCTGA

Translation (1034 aa):
MAAATGAVAASAASGQAEGKKITDLRVIDLKSELKRRNLDITGVKTVLISRLKQAIEEEGGDPDNIELTV
STDTPNKKPTKGKGKKHEADELSGDASVEDDAFIKDCELENQEAHEQDGNDELKDSEEFGENEEENVHSK
ELLSAEENKRAHELIEAEGIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKDIAGSGDGTQEVSK
PLPSEGSLAEADHTAHEEMEAHTTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPK
DGQDAIAQSPEKESKDYEMNANHKDGKKEDCVKGDPVEKEARESSKKAESGDKEKDTLKKGPSSTGASGQ
AKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNAR
SPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLISVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSD
RSSKTQASVKKEEKRSSEKSEKKESKDTKKIEGKDEKNDNGASGQTSESIKKSEEKKRISSKSPGHMVIL
DQTKGDHCRPSRRGRYEKIHGRSKEKERASLDKKRDKDYRRKEILPFEKMKEQRLREHLVRFERLRRAME
LRRRREIAERERRERERIRIIREREERERLQRERERLEIERQKLERERMERERLERERIRIEQERRKEAE
RIAREREELRRQQQQLRYEQEKRNSLKRPRDVDHRRDDPYWSENKKLSLDTDARFGHGSDYSRQQNRFND
FDHRERGRFPESSAVQSSSFERRDRFVGQSEGKKARPTARREDPSFERYPKNFSDSRRNEPPPPRNELRE
SDRREVRGERDERRTVIIHDRPDITHPRHPREAGPNPSRPTSWKSEGSMSTDKRETRVERPERSGREVSG
HSVRGAPPGNRSSASGYGSREGDRGVITDRGGGSQHYPEERHVVERHGRDTSGPRKEWHGPPSQGPSYHD
TRRMGDGRAGAGMITQHSSNASPINRIVQISGNSMPRGSGSGFKPFKGGPPRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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