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Report for CCDS8976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8976.1 Public Homo sapiens 12 HELB 24 110 108 CCDS HistoryNCBI Gene:92797Re-query CCDS DB by CCDS ID:8976.1Re-query CCDS DB by GeneID:92797See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 8976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000247815.9 ENSP00000247815.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000247815.9Link to Ensembl Protein Viewer:ENSP00000247815.5Re-query CCDS DB by Nucleotide ID:ENST00000247815Re-query CCDS DB by Protein ID:ENSP00000247815
Original member Current member EBI ENST00000545134.1 ENSP00000443287.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545134.1Link to Ensembl Protein Viewer:ENSP00000443287.1Re-query CCDS DB by Nucleotide ID:ENST00000545134Re-query CCDS DB by Protein ID:ENSP00000443287
Original member Current member NCBI NM_001370285.1 NP_001357214.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370285.1Link to Protein Sequence:NP_001357214.1Re-query CCDS DB by Nucleotide ID:NM_001370285Re-query CCDS DB by Protein ID:NP_001357214Link to BLAST:NP_001357214.1
Original member Current member NCBI NM_033647.5 NP_387467.2 Accepted alive Link to Nucleotide Sequence:NM_033647.5Link to Protein Sequence:NP_387467.2Re-query CCDS DB by Nucleotide ID:NM_033647Re-query CCDS DB by Protein ID:NP_387467Link to BLAST:NP_387467.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357214.1 1087 Q8NG08-1 1087 100% 0 0
NP_387467.2 1087 Q8NG08-1 1087 100% 0 0

Chromosomal Locations for CCDS 8976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 66302604 66302790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66304731 66305150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66306345 66306514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66309706 66310608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66313986 66314163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66315242 66315383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66318638 66318792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66321948 66322029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66322724 66322783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66323983 66324211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66324983 66325126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66331154 66331645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66338001 66338102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3264 nt):
ATGGCCAGGTCGAGTCCGTACCTGCGCCAACTTCAGGGACCTCTGCTCCCACCCAGGGATCTGGTGGAGG
AGGACGACGACTACCTAAACGACGACGTGGAGGAGGATGAAGAGTCCGTGTTCATCGACGCCGAGGAGCT
CTGCAGTGGGGGCGTAAAGGCTGGCAGCCTCCCCGGGTGCCTCCGCGTTTCTATTTGTGATGAAAACACA
CAAGAGACATGTAAAGTGTTTGGACGTTTTCCGATAACAGGTGCTTGGTGGAGAGTGAAGGTACAAGTAA
AGCCTGTGGTGGGATCAAGGAGCTATCAATATCAAGTTCAAGGATTTCCGTCTTACTTTTTGCAGTCTGA
TATGTCACCACCAAATCAAAAACATATCTGTGCTCTCTTTCTTAAAGAGTGTGAGGTCTCCAGTGATGAT
GTTAATAAATTTTTAACATGGGTAAAGGAGGTATCAAACTACAAAAACCTAAACTTTGAAAATCTTAGGG
AAACACTAAGAACTTTCCACAAGGAAACTGGAAGGAAAGATCAAAAGCAGCCTACACAGAATGGTCAGGA
AGAGTTGTTCCTAGACAATGAGATGAGTCTTCCTCTGGAAAACACAATTCCATTTAGAAATGTAATGACA
GCTTTGCAGTTTCCGAAGATAATGGAATTCCTTCCAGTTCTTCTGCCTCGACACTTTAAATGGATCATAG
GGTCAGGTTCTAAAGAGATGTTGAAAGAGATAGAAGAGATTTTAGGTACACATCCGTGGAAACTTGGATT
TAGTAAAATAACCTACAGAGAGTGGAAACTCCTGCGATGTGAGGCAAGTTGGATAGCATTTTGTCAGTGT
GAGTCTCTTCTCCAGCTGATGACTGATTTGGAGAAGAATGCATTAATAATGTATTCCAGACTGAAGCAGA
TATGTAGAGAAGATGGGCACACATATGTTGAAGTGAATGACTTAACTTTGACATTGTCAAATCATATGTC
ATTTCATGCTGCTTCAGAGTCTCTGAAGTTTTTGAAGGATATTGGTGTGGTGACATATGAGAAGTCCTGT
GTCTTCCCTTATGACCTTTACCATGCTGAAAGAGCCATCGCCTTTTCAATTTGTGACCTGATGAAGAAAC
CTCCTTGGCATTTATGTGTCGATGTCGAAAAGGTGCTTGCCTCTATTCACACCACAAAACCTGAGAATTC
AAGCGATGATGCATTGAATGAGAGCAAACCTGATGAAGTAAGATTAGAAAATCCTGTGGATGTTGTGGAC
ACACAGGACAATGGTGACCATATTTGGACTAATGGTGAAAATGAAATTAATGCAGAAATAAGTGAAGTTC
AGCTGGATCAGGATCAGGTTGAAGTTCCACTGGATCGGGATCAGGTGGCTGCTTTGGAAATGATTTGCTC
CAATCCTGTGACAGTCATAAGTGGGAAAGGTGGATGTGGGAAGACCACAATCGTTAGCCGTCTTTTTAAG
CATATAGAGCAGTTGGAAGAAAGAGAAGTAAAAAAAGCCTGTGAAGATTTTGAACAAGACCAGAATGCTT
CAGAAGAATGGATTACCTTTACTGAGCAAAGTCAACTAGAGGCGGACAAGGCTATAGAAGTTTTGCTCAC
AGCACCTACAGGGAAAGCAGCTGGCTTACTAAGACAGAAAACTGGTCTTCATGCCTACACACTGTGTCAG
GTCAATTATAGCTTCTATTCATGGACTCAAACAATGATGACCACAAACAAACCATGGAAATTTTCTTCGG
TTAGAGTTCTGGTTGTGGATGAAGGGAGTTTGGTATCTGTAGGAATCTTCAAATCGGTCTTAAATTTATT
GTGTGAGCACTCCAAACTTTCTAAGCTTATTATCCTTGGTGACATTAGACAGTTACCCAGTATTGAACCT
GGTAACTTGCTGAAAGATCTTTTTGAGACTCTTAAGTCAAGAAATTGTGCTATTGAGCTAAAGACAAACC
ATAGAGCAGAATCTCAGCTCATTGTGGACAATGCTACAAGAATCTCAAGACGCCAATTTCCAAAATTTGA
TGCAGAACTAAATATCTCTGATAATCCAACATTACCCATCTCAATTCAAGATAAGACATTTATTTTTGTC
AGGCTCCCAGAAGAGGATGCCAGTTCTCAGTCATCTAAAACTAATCATCACTCTTGTTTATATTCTGCAG
TTAAAACTTTACTACAAGAAAATAACTTACAAAATGCAAAAACATCACAATTTATTGCATTTAGAAGGCA
AGACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACACAGGCCACCTCACCAAAGACCATCAGAGT
AGACTTGTTTTTGGAATTGGTGATAAAATTTGTTGTACCAGGAATGCATACCTCTCAGACTTACTACCTG
AAAATATCTCTGGAAGTCAGCAAAATAATGATCTAGATGCCAGTAGTGAAGACTTTTCTGGTACGCTTCC
TGATTTTGCTAAAAATAAGCGTGACTTTGAAAGTAACGTTCGACTGTGCAATGGAGAGATATTTTTCATA
ACAAATGATGTAACTGATGTAACTTTTGGAAAGAGAAGATCTTTGACCATTAATAATATGGCTGGCCTGG
AAGTAACTGTGGATTTTAAGAAACTAATGAAATATTGTCGCATAAAACATGCATGGGCAAGAACTATTCA
CACTTTTCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGGAAGGCGGGCCGCCAGCACTGGCAG
CATGTCTACACCGCCGTGACCAGGGGCCGCTGCCGAGTGTATGTGATTGCAGAGGAGTCTCAGCTCCGGA
ATGCCATTATGAAAAACAGTTTTCCTAGAAAAACTCGTTTGAAACATTTCTTGCAAAGTAAGCTCTCCTC
TAGCGGCGCACCTCCAGCAGATTTTCCGTCCCCACGGAAGAGCTCTGGAGACAGTGGAGGACCCAGCACA
CCGTCAGCATCTCCACTCCCTGTAGTCACAGACCACGCCATGACAAATGATGTCACCTGGAGCGAGGCCT
CTTCGCCTGATGAGAGGACACTCACCTTTGCTGAAAGATGGCAATTATCTTCACCTGATGGAGTAGATAC
AGATGATGATTTACCAAAATCGCGAGCATCCAAAAGAACCTGTGGTGTGAATGATGATGAAAGTCCAAGC
AAAATTTTTATGGTGGGAGAATCTCCACAAGTGTCTTCCAGACTTCAGAATTTGAGACTGAATAATTTAA
TTCCCAGGCAACTTTTCAAGCCCACCGATAATCAAGAAACTTAG

Translation (1087 aa):
MARSSPYLRQLQGPLLPPRDLVEEDDDYLNDDVEEDEESVFIDAEELCSGGVKAGSLPGCLRVSICDENT
QETCKVFGRFPITGAWWRVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMSPPNQKHICALFLKECEVSSDD
VNKFLTWVKEVSNYKNLNFENLRETLRTFHKETGRKDQKQPTQNGQEELFLDNEMSLPLENTIPFRNVMT
ALQFPKIMEFLPVLLPRHFKWIIGSGSKEMLKEIEEILGTHPWKLGFSKITYREWKLLRCEASWIAFCQC
ESLLQLMTDLEKNALIMYSRLKQICREDGHTYVEVNDLTLTLSNHMSFHAASESLKFLKDIGVVTYEKSC
VFPYDLYHAERAIAFSICDLMKKPPWHLCVDVEKVLASIHTTKPENSSDDALNESKPDEVRLENPVDVVD
TQDNGDHIWTNGENEINAEISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIVSRLFK
HIEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAPTGKAAGLLRQKTGLHAYTLCQ
VNYSFYSWTQTMMTTNKPWKFSSVRVLVVDEGSLVSVGIFKSVLNLLCEHSKLSKLIILGDIRQLPSIEP
GNLLKDLFETLKSRNCAIELKTNHRAESQLIVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFV
RLPEEDASSQSSKTNHHSCLYSAVKTLLQENNLQNAKTSQFIAFRRQDCDLINDCCCKHYTGHLTKDHQS
RLVFGIGDKICCTRNAYLSDLLPENISGSQQNNDLDASSEDFSGTLPDFAKNKRDFESNVRLCNGEIFFI
TNDVTDVTFGKRRSLTINNMAGLEVTVDFKKLMKYCRIKHAWARTIHTFQGSEEQTVVYVVGKAGRQHWQ
HVYTAVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADFPSPRKSSGDSGGPST
PSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLSSPDGVDTDDDLPKSRASKRTCGVNDDESPS
KIFMVGESPQVSSRLQNLRLNNLIPRQLFKPTDNQET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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