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Report for CCDS17440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17440.1 Public Mus musculus 3 Fbxw7 23 108 98 CCDS HistoryNCBI Gene:50754Re-query CCDS DB by CCDS ID:17440.1Re-query CCDS DB by GeneID:50754See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029727.7 ENSMUSP00000029727.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029727.7Link to Ensembl Protein Viewer:ENSMUSP00000029727.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029727Re-query CCDS DB by Protein ID:ENSMUSP00000029727
Original member NCBI NM_080428.3 NP_536353.2 Updated not alive Link to Nucleotide Sequence:NM_080428.3Link to Protein Sequence:NP_536353.2Re-query CCDS DB by Nucleotide ID:NM_080428Re-query CCDS DB by Protein ID:NP_536353
Current member NCBI NM_080428.4 NP_536353.2 Accepted alive Link to Nucleotide Sequence:NM_080428.4Link to Protein Sequence:NP_536353.2Re-query CCDS DB by Nucleotide ID:NM_080428Re-query CCDS DB by Protein ID:NP_536353Link to BLAST:NP_536353.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536353.2 629 Q8VBV4-1 629 100% 0 0

Chromosomal Locations for CCDS 17440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 84952373 84952639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84954875 84954957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84958504 84958645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84965248 84965382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84967440 84967563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84969165 84969301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84970796 84970909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84972375 84972556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84974403 84974628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84976174 84976384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84977273 84977541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGCGTGTGTGCGTCCCGAGCAGCGTTCTGGTTCTGAGCTGCGTCTGCTGGTGCTGGGGAGTTTTGCTGC
CGGTTCCGCTGCCTAATCTTCCTTTTCTGGCGTGCCTGAGCATGTCCACGTTAGAATCTGTGACATACCT
ACCTGAAAAGGGGTTATATTGTCAGAGACTGCCAAGCAGCCGGACACACGGGGGCACAGAATCCCTGAAG
GGGAAAAATACAGAAAATATGGGTTTCTACGGCACATTAAAAATGATTTTTTACAAAATGAAAAGAAAGT
TGGACCATGGTTCTGAAGTTCGTTCCTTTTCTTTGGGAAAGAAACCATGCAAAGTCTCAGATTATACCAG
TACCACTGGCCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGGACCTGAGAGCAGCCAATGGGCAA
GGGCAGCAGCGGCGGAGGATTACATCTGTCCAACCACCCACAGGCCTTCAAGAGTGGCTGAAAATGTTTC
AGAGCTGGAGCGGACCAGAGAAGTTGCTGGCTTTAGATGAGCTCATTGACAGCTGTGAACCAACACAAGT
GAAGCATATGATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTCCTTGCTTCCTAAAGAGTTG
GCACTCTATGTGCTTTCATTCCTGGAACCCAAAGACCTGCTGCAAGCGGCTCAGACTTGTCGATACTGGA
GAATTTTGGCTGAGGATAACCTTCTCTGGAGAGAGAAATGTAAAGAAGAGGGGATTGATGAACCGTTGCA
CATCAAGAGAAGAAAAATAATAAAACCAGGTTTCATACACAGCCCATGGAAGAGTGCGTATATCAGACAG
CACAGAATTGATACAAACTGGAGACGAGGAGAACTCAAATCTCCTAAGGTGCTGAAAGGGCATGATGACC
ATGTGATCACATGCCTACAGTTTTGTGGCAACCGCATAGTTAGTGGTTCTGATGACAACACTTTAAAAGT
TTGGTCAGCGGTCACGGGCAAGTGTCTGAGAACGTTAGTGGGACATACAGGTGGAGTGTGGTCATCACAG
ATGAGAGACAATATCATCATCAGTGGATCGACTGACCGGACTCTCAAAGTGTGGAATGCTGAAACTGGAG
AGTGTATACATACTTTATATGGGCACACTTCTACTGTACGGTGTATGCATCTCCATGAAAAAAGGGTTGT
AAGCGGTTCTCGAGATGCCACTCTCAGGGTTTGGGATATTGAGACCGGCCAGTGTTTACACGTCCTGATG
GGTCACGTAGCAGCGGTCCGCTGCGTTCAGTATGATGGCAGGAGGGTTGTTAGTGGAGCTTATGATTTTA
TGGTGAAGGTGTGGGATCCAGAGACTGAGACCTGTCTACACACGTTACAGGGACACACTAATAGAGTCTA
TTCATTACAGTTTGATGGCATCCATGTGGTGAGTGGATCTCTTGATACATCAATCCGAGTCTGGGATGTG
GAGACAGGGAATTGTATTCACACGCTAACAGGACACCAGTCATTAACGAGTGGAATGGAACTCAAAGACA
ATATTCTTGTCTCTGGGAATGCAGATTCTACAGTTAAGATCTGGGATATCAAAACAGGACAGTGTTTACA
AACTTTGCAAGGTCCCAGCAAGCATCAGAGCGCTGTGACCTGCTTACAGTTCAACAAGAACTTCGTAATT
ACCAGCTCAGACGACGGAACGGTCAAACTCTGGGACTTGAAAACGGGTGAATTTATCCGAAACCTCGTCA
CATTGGAGAGTGGGGGGAGCGGGGGAGTTGTGTGGCGGATCAGGGCCTCAAACACAAAGCTGGTGTGTGC
AGTCGGGAGTCGGAATGGAACTGAGGAAACCAAGCTCCTGGTGCTGGACTTTGATGTGGACATGAAATGA

Translation (629 aa):
MRVCVPSSVLVLSCVCWCWGVLLPVPLPNLPFLACLSMSTLESVTYLPEKGLYCQRLPSSRTHGGTESLK
GKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLVPCSATPTTFGDLRAANGQ
GQQRRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKEL
ALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQ
HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ
MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM
GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV
ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVI
TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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