NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12158.1 Public Homo sapiens 19 RFX2 24 110 108 CCDS HistoryNCBI Gene:5990Re-query CCDS DB by CCDS ID:12158.1Re-query CCDS DB by GeneID:5990See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000592546.5 ENSP00000467166.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592546.5Link to Ensembl Protein Viewer:ENSP00000467166.1Re-query CCDS DB by Nucleotide ID:ENST00000592546Re-query CCDS DB by Protein ID:ENSP00000467166
Original member Current member NCBI NM_134433.3 NP_602309.1 Accepted alive Link to Nucleotide Sequence:NM_134433.3Link to Protein Sequence:NP_602309.1Re-query CCDS DB by Nucleotide ID:NM_134433Re-query CCDS DB by Protein ID:NP_602309Link to BLAST:NP_602309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_602309.1 698 P48378-2 698 100% 0 0

Chromosomal Locations for CCDS 12158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5994835 5994950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5995601 5995643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5997060 5997213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6001815 6002023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6002721 6002870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6004201 6004298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6007012 6007166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6007690 6007802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6008106 6008224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6010136 6010251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6012986 6013105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6016090 6016271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6039980 6040241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6042044 6042123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6044193 6044282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6047407 6047496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGCAGAATTCCGAGGGTGGAGCGGATTCGCCAGCGTCCGTGGCTCTGCGTCCCTCGGCGGCAGCCCCGC
CTGTGCCAGCCTCCCCGCAGAGGGTGTTGGTCCAGGCAGCCAGCTCCAATCCCAAAGGGGCCCAGATGCA
GCCGATCTCCCTCCCCAGAGTTCAGCAGGTACCCCAGCAGGTGCAGCCGGTGCAGCACGTGTATCCTGCC
CAGGTGCAGTACGTGGAAGGGGGAGACGCCGTCTACACCAATGGAGCCATACGAACAGCCTACACCTACA
ACCCCGAGCCTCAGATGTACGCCCCCAGCAGCACGGCTTCTTACTTCGAGGCCCCAGGCGGTGCCCAGGT
GACCGTGGCAGCCTCGTCCCCGCCAGCGGTCCCCTCCCACAGCATGGTGGGCATCACCATGGATGTCGGG
GGGAGCCCCATCGTCTCCAGCGCGGGAGCCTATCTCATCCACGGGGGGATGGACAGCACCAGACACTCCC
TGGCCCACACCTCCCGCTCATCGCCCGCCACGCTCCAGTGGCTGTTGGATAATTATGAAACAGCGGAAGG
TGTGAGTCTCCCCAGAAGTTCTCTTTACAACCACTACCTTCGGCACTGCCAGGAGCACAAGCTAGACCCA
GTGAACGCCGCCTCCTTCGGGAAACTGATCCGTTCTGTGTTTATGGGGCTGAGAACGCGGCGGCTGGGCA
CCAGGGGCAACTCGAAGTACCATTACTATGGGATTCGTCTGAAGCCGGACTCACCACTGAACCGGCTGCA
GGAGGACACGCAGTACATGGCCATGCGGCAGCAGCCCATGCACCAGAAGCCCAGGTACCGGCCAGCCCAG
AAGACGGACAGCCTCGGGGACAGCGGCTCCCACAGCGGCCTGCACAGCACTCCGGAACAGACCATGGCCG
TGCAGAGCCAGCACCACCAGCAGTACATAGATGTCTCCCACGTCTTCCCCGAGTTCCCAGCGCCCGACCT
GGGCAGCTTCCTGCTGCAGGACGGCGTCACACTGCACGACGTCAAGGCCCTGCAGCTGGTGTACAGACGG
CACTGCGAGGCAACTGTAGATGTGGTGATGAACCTCCAGTTCCACTACATCGAGAAGCTGTGGCTCTCCT
TCTGGAACTCTAAGGCCTCCTCCAGCGACGGCCCCACCTCTCTTCCTGCCAGTGACGAAGACCCCGAGGG
CGCCGTCCTGCCCAAGGACAAGCTTATCTCCCTGTGTCAGTGCGACCCCATCCTCAGGTGGATGAGGAGC
TGCGACCACATCCTCTACCAGGCGCTGGTGGAGATTCTCATCCCCGACGTGCTGAGGCCGGTCCCCAGTA
CCTTGACACAGGCCATCCGTAACTTTGCCAAGAGCTTGGAAGGCTGGTTGACAAATGCCATGAGTGACTT
CCCACAACAGGTCATCCAGACCAAGGTGGGCGTCGTCAGTGCCTTCGCCCAGACGCTGCGGCGCTACACG
TCCCTCAACCACCTGGCGCAGGCGGCCCGGGCGGTGCTGCAGAACACGTCCCAGATCAACCAGATGCTCA
GCGACCTCAACCGCGTGGACTTTGCCAACGTGCAGGAGCAGGCCTCGTGGGTGTGCCAGTGCGAGGAGAG
TGTGGTGCAGCGGCTGGAGCAGGATTTCAAGCTGACCCTGCAGCAGCAGAGCTCCCTGGACCAGTGGGCC
AGCTGGCTGGACAGTGTGGTCACCCAGGTCCTGAAGCAGCATGCCGGCAGCCCCAGCTTCCCCAAGGCCG
CCCGGCAGTTCTTGCTGAAATGGTCCTTTTACAGCTCCATGGTGATCCGGGACCTGACCCTGCGCAGCGC
TGCCAGCTTCGGCTCCTTCCACCTCATCCGCCTGCTCTACGACGAGTACATGTTCTACCTGGTGGAGCAC
CGCGTCGCGGAGGCCACCGGAGAGACGCCGATCGCTGTGATGGGAGAGTTCAACGATCTCGCCTCTCTGT
CGCTGACGCTGCTCGACAAAGATGACATGGGCGATGAGCAGCGTGGCAGCGAGGCGGGCCCAGACGCCCG
CAGCCTGGGTGAGCCCCTGGTAAAGCGGGAGCGCAGTGACCCCAACCACTCCCTGCAGGGCATCTAG

Translation (698 aa):
MQNSEGGADSPASVALRPSAAAPPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPA
QVQYVEGGDAVYTNGAIRTAYTYNPEPQMYAPSSTASYFEAPGGAQVTVAASSPPAVPSHSMVGITMDVG
GSPIVSSAGAYLIHGGMDSTRHSLAHTSRSSPATLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDP
VNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQ
KTDSLGDSGSHSGLHSTPEQTMAVQSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRR
HCEATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCDPILRWMRS
CDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQTKVGVVSAFAQTLRRYT
SLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEESVVQRLEQDFKLTLQQQSSLDQWA
SWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEH
RVAEATGETPIAVMGEFNDLASLSLTLLDKDDMGDEQRGSEAGPDARSLGEPLVKRERSDPNHSLQGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH