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Report for CCDS8577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8577.1 Public Homo sapiens 12 CD163L1 24 110 108 CCDS HistoryNCBI Gene:283316Re-query CCDS DB by CCDS ID:8577.1Re-query CCDS DB by GeneID:283316See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313599.8 ENSP00000315945.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313599.8Link to Ensembl Protein Viewer:ENSP00000315945.3Re-query CCDS DB by Nucleotide ID:ENST00000313599Re-query CCDS DB by Protein ID:ENSP00000315945
Original member Current member NCBI NM_174941.6 NP_777601.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174941.6Link to Protein Sequence:NP_777601.3Re-query CCDS DB by Nucleotide ID:NM_174941Re-query CCDS DB by Protein ID:NP_777601Link to BLAST:NP_777601.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777601.3 1453 Q9NR16-1 1453 100% 0 0

Chromosomal Locations for CCDS 8577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7357404 7357486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7367236 7367331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7368087 7368197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7368933 7368965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7369357 7369665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7373320 7373640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7374442 7374756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7374831 7374923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7375281 7375595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7375700 7376014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7378978 7379298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7396095 7396415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7398264 7398584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7403535 7403855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7406532 7406852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7432416 7432736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7433374 7433694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7441154 7441246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7444097 7444127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4362 nt):
ATGATGCTGCCTCAAAACTCGTGGCATATTGATTTTGGAAGATGCTGCTGTCATCAGAACCTTTTCTCTG
CTGTGGTAACTTGCATCCTGCTCCTGAATTCCTGCTTTCTCATCAGCAGTTTTAATGGAACAGATTTGGA
GTTGAGGCTGGTCAATGGAGACGGTCCCTGCTCTGGGACAGTGGAGGTGAAATTCCAGGGACAGTGGGGG
ACTGTGTGTGATGATGGGTGGAACACTACTGCCTCAACTGTCGTGTGCAAACAGCTTGGATGTCCATTTT
CTTTCGCCATGTTTCGTTTTGGACAAGCCGTGACTAGACATGGAAAAATTTGGCTTGATGATGTTTCCTG
TTATGGAAATGAGTCAGCTCTCTGGGAATGTCAACACCGGGAATGGGGAAGCCATAACTGTTATCATGGA
GAAGATGTTGGTGTGAACTGTTATGGTGAAGCCAATCTGGGTTTGAGGCTAGTGGATGGAAACAACTCCT
GTTCAGGGAGAGTGGAGGTGAAATTCCAAGAAAGGTGGGGAACTATATGTGATGATGGGTGGAACTTGAA
TACTGCTGCCGTGGTGTGCAGGCAACTAGGATGTCCATCTTCTTTTATTTCTTCTGGAGTTGTTAATAGC
CCTGCTGTATTGCGCCCCATTTGGCTGGATGACATTTTATGCCAGGGGAATGAGTTGGCACTCTGGAATT
GCAGACATCGTGGATGGGGAAATCATGACTGCAGTCACAATGAGGATGTCACATTAACTTGTTATGATAG
TAGTGATCTTGAACTAAGGCTTGTAGGTGGAACTAACCGCTGTATGGGGAGAGTAGAGCTGAAAATCCAA
GGAAGGTGGGGGACCGTATGCCACCATAAGTGGAACAATGCTGCAGCTGATGTCGTATGCAAGCAGTTGG
GATGTGGAACCGCACTTCACTTCGCTGGCTTGCCTCATTTGCAGTCAGGGTCTGATGTTGTATGGCTTGA
TGGTGTCTCCTGCTCCGGTAATGAATCTTTTCTTTGGGACTGCAGACATTCCGGAACCGTCAATTTTGAC
TGTCTTCATCAAAACGATGTGTCTGTGATCTGCTCAGATGGAGCAGATTTGGAACTGCGACTAGCAGATG
GAAGTAACAATTGTTCAGGGAGAGTAGAGGTGAGAATTCATGAACAGTGGTGGACAATATGTGACCAGAA
CTGGAAGAATGAACAAGCCCTTGTGGTTTGTAAGCAGCTAGGATGTCCGTTCAGCGTCTTTGGCAGTCGT
CGTGCTAAACCTAGTAATGAAGCTAGAGACATTTGGATAAACAGCATATCTTGCACTGGGAATGAGTCAG
CTCTCTGGGACTGCACATATGATGGAAAAGCAAAGCGAACATGCTTCCGAAGATCAGATGCTGGAGTAAT
TTGTTCTGATAAGGCAGATCTGGACCTAAGGCTTGTCGGGGCTCATAGCCCCTGTTATGGGAGATTGGAG
GTGAAATACCAAGGAGAGTGGGGGACTGTGTGTCATGACAGATGGAGCACAAGGAATGCAGCTGTTGTTT
GTAAACAATTGGGATGTGGAAAGCCTTTGCATGTGTTTGGTATGACCTATTTTAAAGAAGCATCAGGACC
TATTTGGCTGGATGACGTTTCTTGCATTGGAAATGAGTCAAATATCTGGGACTGTGAACACAGTGGATGG
GGAAAGCATAATTGTGTACACAGAGAGGATGTGATTGTAACCTGCTCAGGTGATGCAACATGGGGCCTGA
GGCTGGTGGGCGGCAGCAACCGCTGCTCGGGAAGACTGGAGGTGTACTTTCAAGGACGGTGGGGCACAGT
GTGTGATGACGGCTGGAACAGTAAAGCTGCAGCTGTGGTGTGTAGCCAGCTGGACTGCCCATCTTCTATC
ATTGGCATGGGTCTGGGAAACGCTTCTACAGGATATGGAAAAATTTGGCTCGATGATGTTTCCTGTGATG
GAGATGAGTCAGATCTCTGGTCATGCAGGAACAGTGGGTGGGGAAATAATGACTGCAGTCACAGTGAAGA
TGTTGGAGTGATCTGTTCTGATGCATCGGATATGGAGCTGAGGCTTGTGGGTGGAAGCAGCAGGTGTGCT
GGAAAAGTTGAGGTGAATGTCCAGGGTGCCGTGGGAATTCTGTGTGCTAATGGCTGGGGAATGAACATTG
CTGAAGTTGTTTGCAGGCAACTTGAATGTGGGTCTGCAATCAGGGTCTCCAGAGAGCCTCATTTCACAGA
AAGAACATTACACATCTTAATGTCGAATTCTGGCTGCACTGGAGGGGAAGCCTCTCTCTGGGATTGTATA
CGATGGGAGTGGAAACAGACTGCGTGTCATTTAAATATGGAAGCAAGTTTGATCTGCTCAGCCCACAGGC
AGCCCAGGCTGGTTGGAGCTGATATGCCCTGCTCTGGACGTGTTGAAGTGAAACATGCAGACACATGGCG
CTCTGTCTGTGATTCTGATTTCTCTCTTCATGCTGCCAATGTGCTGTGCAGAGAATTAAACTGTGGAGAT
GCCATATCTCTTTCTGTGGGAGATCACTTTGGAAAAGGGAATGGTCTAACTTGGGCCGAAAAGTTCCAGT
GTGAAGGGAGTGAAACTCACCTTGCATTATGCCCCATTGTTCAACATCCGGAAGACACTTGTATCCACAG
CAGAGAAGTTGGAGTTGTCTGTTCCCGATATACAGATGTCCGACTTGTGAATGGCAAATCCCAGTGTGAC
GGGCAAGTGGAGATCAACGTGCTTGGACACTGGGGCTCACTGTGTGACACCCACTGGGACCCAGAAGATG
CCCGTGTTCTATGCAGACAGCTCAGCTGTGGGACTGCTCTCTCAACCACAGGAGGAAAATATATTGGAGA
AAGAAGTGTTCGTGTGTGGGGACACAGGTTTCATTGCTTAGGGAATGAGTCACTTCTGGATAACTGTCAA
ATGACAGTTCTTGGAGCACCTCCCTGTATCCATGGAAATACTGTCTCTGTGATCTGCACAGGAAGCCTGA
CCCAGCCACTGTTTCCATGCCTCGCAAATGTATCTGACCCATATTTGTCTGCAGTTCCAGAGGGCAGTGC
TTTGATCTGCTTAGAGGACAAACGGCTCCGCCTAGTGGATGGGGACAGCCGCTGTGCCGGGAGAGTAGAG
ATCTATCACGACGGCTTCTGGGGCACCATCTGTGATGACGGCTGGGACCTGAGCGATGCCCACGTGGTGT
GTCAAAAGCTGGGCTGTGGAGTGGCCTTCAATGCCACGGTCTCTGCTCACTTTGGGGAGGGGTCAGGGCC
CATCTGGCTGGATGACCTGAACTGCACAGGAATGGAGTCCCACTTGTGGCAGTGCCCTTCCCGCGGCTGG
GGGCAGCACGACTGCAGGCACAAGGAGGACGCAGGGGTCATCTGCTCAGAATTCACAGCCTTGAGGCTCT
ACAGTGAAACTGAAACAGAGAGCTGTGCTGGGAGATTGGAAGTCTTCTATAACGGGACCTGGGGCAGCGT
CGGCAGGAGGAACATCACCACAGCCATAGCAGGCATTGTGTGCAGGCAGCTGGGCTGTGGGGAGAATGGA
GTTGTCAGCCTCGCCCCTTTATCTAAGACAGGCTCTGGTTTCATGTGGGTGGATGACATTCAGTGTCCTA
AAACGCATATCTCCATATGGCAGTGCCTGTCTGCCCCATGGGAGCGAAGAATCTCCAGCCCAGCAGAAGA
GACCTGGATCACATGTGAAGATAGAATAAGAGTGCGTGGAGGAGACACCGAGTGCTCTGGGAGAGTGGAG
ATCTGGCACGCAGGCTCCTGGGGCACAGTGTGTGATGACTCCTGGGACCTGGCCGAGGCGGAAGTGGTGT
GTCAGCAGCTGGGCTGTGGCTCTGCTCTGGCTGCCCTGAGGGACGCTTCGTTTGGCCAGGGAACTGGAAC
CATCTGGTTGGATGACATGCGGTGCAAAGGAAATGAGTCATTTCTATGGGACTGTCACGCCAAACCCTGG
GGACAGAGTGACTGTGGACACAAGGAAGATGCTGGCGTGAGGTGCTCTGGACAGTCGCTGAAATCACTGA
ATGCCTCCTCAGGTCATTTAGCACTTATTTTATCCAGTATCTTTGGGCTCCTTCTCCTGGTTCTGTTTAT
TCTATTTCTCACGTGGTGCCGAGTTCAGAAACAAAAACATCTGCCCCTCAGAGTTTCAACCAGAAGGAGG
GGTTCTCTCGAGGAGAATTTATTCCATGAGATGGAGACCTGCCTCAAGAGAGAGGACCCACATGGGACAA
GAACCTCAGATGACACCCCCAACCATGGTTGTGAAGATGCTAGCGACACATCGCTGTTGGGAGTTCTTCC
TGCCTCTGAAGCCACAAAATGA

Translation (1453 aa):
MMLPQNSWHIDFGRCCCHQNLFSAVVTCILLLNSCFLISSFNGTDLELRLVNGDGPCSGTVEVKFQGQWG
TVCDDGWNTTASTVVCKQLGCPFSFAMFRFGQAVTRHGKIWLDDVSCYGNESALWECQHREWGSHNCYHG
EDVGVNCYGEANLGLRLVDGNNSCSGRVEVKFQERWGTICDDGWNLNTAAVVCRQLGCPSSFISSGVVNS
PAVLRPIWLDDILCQGNELALWNCRHRGWGNHDCSHNEDVTLTCYDSSDLELRLVGGTNRCMGRVELKIQ
GRWGTVCHHKWNNAAADVVCKQLGCGTALHFAGLPHLQSGSDVVWLDGVSCSGNESFLWDCRHSGTVNFD
CLHQNDVSVICSDGADLELRLADGSNNCSGRVEVRIHEQWWTICDQNWKNEQALVVCKQLGCPFSVFGSR
RAKPSNEARDIWINSISCTGNESALWDCTYDGKAKRTCFRRSDAGVICSDKADLDLRLVGAHSPCYGRLE
VKYQGEWGTVCHDRWSTRNAAVVCKQLGCGKPLHVFGMTYFKEASGPIWLDDVSCIGNESNIWDCEHSGW
GKHNCVHREDVIVTCSGDATWGLRLVGGSNRCSGRLEVYFQGRWGTVCDDGWNSKAAAVVCSQLDCPSSI
IGMGLGNASTGYGKIWLDDVSCDGDESDLWSCRNSGWGNNDCSHSEDVGVICSDASDMELRLVGGSSRCA
GKVEVNVQGAVGILCANGWGMNIAEVVCRQLECGSAIRVSREPHFTERTLHILMSNSGCTGGEASLWDCI
RWEWKQTACHLNMEASLICSAHRQPRLVGADMPCSGRVEVKHADTWRSVCDSDFSLHAANVLCRELNCGD
AISLSVGDHFGKGNGLTWAEKFQCEGSETHLALCPIVQHPEDTCIHSREVGVVCSRYTDVRLVNGKSQCD
GQVEINVLGHWGSLCDTHWDPEDARVLCRQLSCGTALSTTGGKYIGERSVRVWGHRFHCLGNESLLDNCQ
MTVLGAPPCIHGNTVSVICTGSLTQPLFPCLANVSDPYLSAVPEGSALICLEDKRLRLVDGDSRCAGRVE
IYHDGFWGTICDDGWDLSDAHVVCQKLGCGVAFNATVSAHFGEGSGPIWLDDLNCTGMESHLWQCPSRGW
GQHDCRHKEDAGVICSEFTALRLYSETETESCAGRLEVFYNGTWGSVGRRNITTAIAGIVCRQLGCGENG
VVSLAPLSKTGSGFMWVDDIQCPKTHISIWQCLSAPWERRISSPAEETWITCEDRIRVRGGDTECSGRVE
IWHAGSWGTVCDDSWDLAEAEVVCQQLGCGSALAALRDASFGQGTGTIWLDDMRCKGNESFLWDCHAKPW
GQSDCGHKEDAGVRCSGQSLKSLNASSGHLALILSSIFGLLLLVLFILFLTWCRVQKQKHLPLRVSTRRR
GSLEENLFHEMETCLKREDPHGTRTSDDTPNHGCEDASDTSLLGVLPASEATK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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