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Report for CCDS18170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18170.1 Public Mus musculus 4 Plppr1 23 108 98 CCDS HistoryNCBI Gene:272031Re-query CCDS DB by CCDS ID:18170.1Re-query CCDS DB by GeneID:272031See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076670.2 ENSMUSP00000075966.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076670.2Link to Ensembl Protein Viewer:ENSMUSP00000075966.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076670Re-query CCDS DB by Protein ID:ENSMUSP00000075966
Original member Current member NCBI NM_178756.4 NP_848871.1 Accepted alive Link to Nucleotide Sequence:NM_178756.4Link to Protein Sequence:NP_848871.1Re-query CCDS DB by Nucleotide ID:NM_178756Re-query CCDS DB by Protein ID:NP_848871Link to BLAST:NP_848871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848871.1 325 Q8BFZ2-1 325 100% 0 0

Chromosomal Locations for CCDS 18170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49206433 49206495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49282256 49282444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49300921 49301053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49319761 49320011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49323348 49323524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49325619 49325750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49337646 49337678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCTGTAGAAAACAACACTCAACGCAGTTACTCCATCATTCCATGTTTTATATTTGTTGAGCTTGTCA
TCATGGCTGGGACCGTGCTGCTTGCCTACTACTTCGAATGCACTGACACCTTTCAGGTGCATATCCAAGG
ATTCTTCTGTCAGGACGGAGACTTAATGAAGCCTTACCCGGGGACAGAGGAGGAAAGTTTCATCAGCCCT
CTGGTGCTCTACTGCGTTCTGGCTGCCACTCCAACTGCTATTATTTTCATTGGTGAAATATCCATGTATT
TCATAAAGTCAACAAGGGAGTCCCTGATTGCTGAGGAGAAAATGATCCTGACAGGGGACTGCTGCTACCT
GAGCCCCTTACTCCGAAGGATCATCAGGTTCATCGGGGTATTTGCATTTGGACTTTTTGCTACTGACATT
TTTGTAAACGCGGGGCAAGTCGTCACTGGTCACCTAACACCATACTTCCTGACAGTGTGCCAGCCAAACT
ATACCAGTACAGACTGCCGGGCACACCAACAGTTCATCAACAATGGCAACATCTGCACTGGGGACCTGGA
AGTGATAGAAAAAGCTCGGAGGTCCTTTCCCTCCAAACATGCTGCTCTGAGCATTTACTCCGCCTTATAT
GCCACGATGTACATCACAAGCACAATCAAGACGAAGAGCAGTCGGCTGGCCAAGCCAGTGCTGTGCTTGG
GGACCCTCTGTACCGCCTTCCTGACAGGCCTCAACCGCGTCTCAGAGTACCGGAACCACTGTTCCGACGT
GATCGCCGGCTTCATCCTGGGCACCGCAGTGGCCCTGTTTTTGGGAATGTGTGTGGTTCATAACTTCAGA
GGAACCCAAGGCTCTCCTTCCAAACCCAAACCCGAGGATCCCCGCGGAGTTCCCCTGATGGCTTTCCCAA
GGATAGAGAGCCCGCTGGAAACCTTAAGTGCACAGAATCACTCCGCCTCCATGACCGAAGTCACCTGA

Translation (325 aa):
MAVENNTQRSYSIIPCFIFVELVIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPYPGTEEESFISP
LVLYCVLAATPTAIIFIGEISMYFIKSTRESLIAEEKMILTGDCCYLSPLLRRIIRFIGVFAFGLFATDI
FVNAGQVVTGHLTPYFLTVCQPNYTSTDCRAHQQFINNGNICTGDLEVIEKARRSFPSKHAALSIYSALY
ATMYITSTIKTKSSRLAKPVLCLGTLCTAFLTGLNRVSEYRNHCSDVIAGFILGTAVALFLGMCVVHNFR
GTQGSPSKPKPEDPRGVPLMAFPRIESPLETLSAQNHSASMTEVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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