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Report for CCDS8249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8249.1 Public Homo sapiens 11 GDPD4 24 110 108 CCDS HistoryNCBI Gene:220032Re-query CCDS DB by CCDS ID:8249.1Re-query CCDS DB by GeneID:220032See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315938.5 ENSP00000320815.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315938.5Link to Ensembl Protein Viewer:ENSP00000320815.4Re-query CCDS DB by Nucleotide ID:ENST00000315938Re-query CCDS DB by Protein ID:ENSP00000320815
Original member Current member NCBI NM_182833.3 NP_878253.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182833.3Link to Protein Sequence:NP_878253.1Re-query CCDS DB by Nucleotide ID:NM_182833Re-query CCDS DB by Protein ID:NP_878253Link to BLAST:NP_878253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878253.1 520 Q6W3E5-2 520 100% 0 0

Chromosomal Locations for CCDS 8249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77217277 77217314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77227864 77227916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77229150 77229232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77233025 77233172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77243694 77243848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77245281 77245502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77258386 77258542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77268457 77268539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77268924 77269069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77269883 77269960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77271130 77271223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77271295 77271393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77276161 77276220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77279306 77279399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77285085 77285137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGTTGCTGTTCCTGTGGATAGAAACATCCAGTGAATACTTTAACTTTGACTGGGTCACTTTTCTAGGAA
CAGGATACTGGTTTTTCTGGTCTATTTTTATTCTGAGTTTAGCTAGGATCCTGACTGCCTACTCTTCATT
GCTGTTGTTACTTGGATTTTTGTTGCTTTGGGAAAGGATTGAACTATACCTGCACTTGTGTCATAAGATC
CTGATTCTGCTAGTGATTCTTCTGTGTGTCATTTTAATGTTCATTATATGCAAATTCTGGAAAGAAAGGT
GGCTGGTAGCTGGGCTGTCAATGCAGATCTTTGCTCCCTACGTGCACCTGGTCAGCATAACTGTGATGGT
TATCCTTTTCTGGCCTGTGGCCTTCTACGTGGCATGTTTGGAAAGAGAAGTTAGAATGAGAAGATACAGG
ATGACACATTCTGAGAAAAAAAGACTCAAGCAATGTAATGTAATCACAAGGTTAAGAGGTCTACAAGTGC
CTGTTGGATTACCCTTTCTTCTTATCCTTTTAGGTCTCTATTTGATGCCACTGGGGATTTATTCTCCCTG
CATTCAGGAGAAGGAGAATTTGGGGCCCAAGCCAACCATCTTTGGACATAGAGGTGCACCCATGTTGGGG
CCTGAGAATACCATGATGTCCTTTGAGAAAGCTGTTGAACATGGAGCCCATGGATTGGAGACTGATATAC
ACTTAAGTTATGATCATGTGCCTTTCCTCATGCATGACTTTGACCTGAAAAGAACAACCAATATTGGGGA
AGTTCAGCCAGAATCTGCCTGCGAGAACCCTGCCTTCTTCAACTGGGATTTCCTATCGACTCTGAATGCA
GGCAAATGGTTTGTAAAACCAGAGCTCAGGCCATTTTACAATATGAAACCTCTATCAGAGGCAGATAAAG
AAAGAGCAAGAAATCAGTCAATTCCAACACTAGCTGATTTATTGACACTTGCAGAGAAGGAAAGAAAATT
TGTGATATTTGATCTTCATCGCCCTCCACCAAAACATCCTCTCAGACACACATTTGTCCGCCAAGTAGTA
AGCGTGATCCTTGCCTCTAAAATCGAGCAACATCTGATTTTTTGGTTGCCAGCTCATGATAGGCAATACG
TCAGGTCCGTGGCTCCTGGTTTTCAGCATGTGGGCCGTTTAGTATCCATTGAAACCCTTGCTAAAAACAA
TATCAGTATAATAAATGTTGACTACAAGAAGTTGTTCCCTAATGGGTTAAGAGATTATAAAGCAGCTAAC
ATCCATATCAACGTATACACCGTCAATGAGCCTTGGCTTTTCTCACTGGCCTGGTGCTCCAGGATTAACT
CAGTGACCACAGACAACATTGGGCTCCTGAGTCAGCTTGATCACCCTCACTTCTTCATGACACCAAAGTT
CTATGTGTTCATGTGGCTCCTTGCAGATATCATTTCTGTGCTTTTTATTGTTGCCATATTTTGTTTTCAC
TGGCGGAGAGAGACTGAAAAAGAAAAATTGTTTGAAACCTCCAGCACTCGCACAGATACTCAGAGTGGAA
GTAAGAATGAGGAAGATAGATAG

Translation (520 aa):
MLLFLWIETSSEYFNFDWVTFLGTGYWFFWSIFILSLARILTAYSSLLLLLGFLLLWERIELYLHLCHKI
LILLVILLCVILMFIICKFWKERWLVAGLSMQIFAPYVHLVSITVMVILFWPVAFYVACLEREVRMRRYR
MTHSEKKRLKQCNVITRLRGLQVPVGLPFLLILLGLYLMPLGIYSPCIQEKENLGPKPTIFGHRGAPMLG
PENTMMSFEKAVEHGAHGLETDIHLSYDHVPFLMHDFDLKRTTNIGEVQPESACENPAFFNWDFLSTLNA
GKWFVKPELRPFYNMKPLSEADKERARNQSIPTLADLLTLAEKERKFVIFDLHRPPPKHPLRHTFVRQVV
SVILASKIEQHLIFWLPAHDRQYVRSVAPGFQHVGRLVSIETLAKNNISIINVDYKKLFPNGLRDYKAAN
IHINVYTVNEPWLFSLAWCSRINSVTTDNIGLLSQLDHPHFFMTPKFYVFMWLLADIISVLFIVAIFCFH
WRRETEKEKLFETSSTRTDTQSGSKNEEDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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