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Report for CCDS48536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48536.1 Public Mus musculus 10 Amd2 23 108 98 CCDS HistoryNCBI Gene:100041585Re-query CCDS DB by CCDS ID:48536.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080898.3 ENSMUSP00000079703.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080898.3Link to Ensembl Protein Viewer:ENSMUSP00000079703.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080898Re-query CCDS DB by Protein ID:ENSMUSP00000079703
Original member Current member NCBI NM_007444.3 NP_031470.3 Accepted alive Link to Nucleotide Sequence:NM_007444.3Link to Protein Sequence:NP_031470.3Re-query CCDS DB by Nucleotide ID:NM_007444Re-query CCDS DB by Protein ID:NP_031470Link to BLAST:NP_031470.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031470.3 334 D3Z6H8 334 100% 0 0

Chromosomal Locations for CCDS 48536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 35710555 35711559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGAAGCTGCACATTTTTTCGAAGGGACGGAGAAACTGCTGGAGGTCTGGTTTTCCAGACAGCAGTCCG
ACGCAAGCCAGGGATCTGGGGATCTTCGTACCATCCCAAGATCTGAATGGGATGTCCTTTTGAAGGATGT
GCAGTGCTCAATCATAAGTGTGACAAAGACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATG
TTTGTCTCCAAGAGACGTTTCATTTTGAAGACATGTGGTACCACCCTCTTACTGAAAGCACTGGTTCCCC
TGTTGAAGCTTGCTAGGGATTACAGTGGGTTTGACTCAATTCAAAGCTTCTTTTATTCTCGTAAGAATTT
CATGAAGCCTTCTCACCAAGGGTACCCACACCGGAATTTCCAGGAAGAAATCGAGTTTCTTAATGCAATT
TTCCCAAATGGAGCAGCATATTGTATGGGACGCATGAATTCTGACTGCTGGTACTTGTATACTTTGGATT
TCCCAGAGAGCCGAGTAATCAGTCAGCCAGATCAAACACTGGAAATTCTGATGAGTGAGCTTGACCCAGC
AGTTATGGACCAGTTCTACATGAAAGATGGTGTTACTGCAAAGGATGTCACTCGTGAGAGTGGAATTCGT
GACCTGATACCAGGTTCTGTCATTGATGCCACACTGTTCAATCCTTGTGGCTACTCGATGAATGGAATGA
AATCGGATGGAACATATTGGACTATTCACATCACTCCAGAACCAGAATTTTCTTATGTTAGCTTTGAAAC
AAACCTAAGTCAGACCTCCTATGACCACCTGATCAGGAAAGTTGTGGAAGTCTTCAAGCCAGGAAAATTT
GTGACCACCTTGTTTGTTAATCAGAGTTCTAAATGTCGCACAGTGCTTTCTTCGCCCCAGAAGATTGACG
GCTTTAAACGTCTTGATTGCCAGAGTGCTATGTTCAACGATTACAATTTTGTTTTTACCAGTTTTGCTAA
GAAACAGCAACAACAGCAGAGTTGA

Translation (334 aa):
MEAAHFFEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSM
FVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAI
FPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIR
DLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDHLIRKVVEVFKPGKF
VTTLFVNQSSKCRTVLSSPQKIDGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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