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Report for CCDS55176.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
55176.1 |
Public |
Homo sapiens |
7 |
CTAGE4 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:100128553](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:55176.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 55176.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000486333.2 |
ENSP00000419539.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000486333.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000419539.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000486333](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000419539](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_198495.3 |
NP_940897.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_198495.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_940897.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_198495](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_940897](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_940897.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_940897.2 |
777 |
Q8IX94 |
777 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 55176.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2334 nt): ATGGAGGAGCCTGGTGCTACCCCTCAGCCCTACCTGGGGCTGGTCCTGGAGGAGCTACGCAGAGTTGTGG CAGCACTACCTGAGAGTATGAGACCAGATGAGAATCCTTATGGTTTTCCATCGGAACTGGTGGTATGTGC AGCTGTTATTGGATTTTTTGTTGTTCTCCTTTTTTTGTGGAGAAGTTTTAGATCGGTTAGGAGTCGGCTT TACGTGGGAAGAGAGCAAAAACTTGGTGCAACGCTTTCTGGACTAATTGAAGAAAAATGTAAACTACTTG AAAAGTTTAGCCTTATTCAAAAAGAGTATGAAGGCTATGAAGTAGAGTCATCTTTAGAGGATGCCAGCTT TGAGAAGGCGGCAGCAGAAGAAGCACGAAGTTTGGAGGCAACCTGTGAAAAGCTGAACAGGTCCAATTCT GAACTTGAGGATGAAATCCTCTGTCTAGAAAAAGACTTAAAAGAAGAGAAATCTAAACATTCTCAACAAG ATGAATTGATGGCGGATATTTCAAAAAGTATACAGTCTCTAGAAGATGAGTCAAAATCCCTCAAATCACA AATAGCTGAAGCCAAAATCATCTGCAAGACATTTAAAATGAGTGAAGAACGACGGGCTATAGCAATAAAA GATGCTTTGAATGAAAATTCTCAACTTCAGACAAGCCATAAACAGCTTTTTCAGCAAGAAGCTGAAGTAT GGAAAGGAGAAGTGAGTGAACTTAATAAACAGAAAATAACATTTGAAGACTCCAAAGTGCACGCAGAACA AGTTCTGAATGATAAAGAAAATCACATCAAGACCCTGACTGGACACTTGCCAATGATGAAAGATCAGGCT GCTGTGCTTGAAGAAGACACAACGGATGATGATAACCTGGAATTAGAAGTGAACAGTCAATGGGAAAATG GTGCTAACTTAGATGATCCTCTGAAAGGAGCTTTGAAGAAACTGATTCATGCTGCTAAGTTAAATGTTTC TTTAAAAAGCTTAGAAGGAGAAAGAAACCACATTATTATTCAGTTATCTGAAGTGGACAAAACAAAGGAA GAGCTTACAGAGCATATTAAAAATCTTCAGACTCAACAAGCATCTTTGCAATCAGAAAACATATATTTTG AAAGTGAGAATCAGAAGCTTCAACAGAAACTTAAAATAATGACTGAATTCTATCAAGAAAATGAAATGAA ACTCTACAGGAAATTAACAGTGGAGGAAAATTACCGAATAGAGGAAGAAGAGAAGCTTTCTAGAGTGGAA GAAAAGATCAGCCGTGCCACTGAAGGGCTGGAGACCTATAGAAAGCTAGCCAAAGATCTTGAAGAAGAAT TGGAGAGAACTGTTCATTTTTATCAAAAGCAGGTTATTTCCTACGAGAAAAGAGGACATGATAATTGGTT GGCAGCTCGGACTGCTGAAAGAAACCTCAGTGATTTAAGGAAAGAAAATGCTCACAACAAACAAAAATTA ACTGAAACAGAGTTGAAATTTGAACTTTTAGAAAAAGATCCTAATGCACTCGATGTTTCAAATACAGCAT TTGGCAGAGAGCATTCCCCATGTAGTCCCTCACCATTGGGTCGGCCTTCATCTGAAACGAGAGCTTTTCC CTCTCCTCAAACTTTGTTGGAGGATCCACTCAGACTCTCACCTGTGCTTCCAGGGGGAGGAGGAAGAGGC CCAAGCAGCCCAGGGAATCCCCTGGACCATCAGATTACCAATGAAAGAGGAGAACCAAGCTATGACAGGT TAATCGATCCTCACAGGGCTCCTTCTGACACTGGGTCCCTGTCATCTCCGGTGGAACAGGACCGTAGGAT GATGTTTCCTCCACCAGGGCAATCATATCCTGATTCAACTCTTCCTCCACAAAGGGAAGACAGATTTTAT TCTAATTCTGAAAGACTGTCTGGACCAGCAGAACCCAGAAGTTTTAAAATGACTTCTTTGGATAAAATGG ATAGGTCAATGCCTTCAGAAATGGAATCCAGTAGAAATGATGCCAAAGATGATCTTGGTAATTTAAATGT GCCTGATTCATCTCTCCCTGCTGAAAATGAAGCAACTGGCCCTGGCCTTATTCCTCCACCTCTTGCTCCA ATCAGCGGTCCATTGTTTCCAGTGGATACAAGGGGCCCGTTCATGAGAAGAGGACCTCCTTTCCCCCCAC CTCCTCCAGGAACCATGTTTGGAGCTTCTCGAGGTTATTTTCCACCAAGGGATTTCCCAGGTCCACCACA TGCTCCATTTGCAATGAGAAACATCTATCCACCGAGGGGTTTACCTCCTTACCTTCATCCGAGACCTGGA TTTTACCCCAACCCCACATTCTGA
Translation (777 aa): MEEPGATPQPYLGLVLEELRRVVAALPESMRPDENPYGFPSELVVCAAVIGFFVVLLFLWRSFRSVRSRL YVGREQKLGATLSGLIEEKCKLLEKFSLIQKEYEGYEVESSLEDASFEKAAAEEARSLEATCEKLNRSNS ELEDEILCLEKDLKEEKSKHSQQDELMADISKSIQSLEDESKSLKSQIAEAKIICKTFKMSEERRAIAIK DALNENSQLQTSHKQLFQQEAEVWKGEVSELNKQKITFEDSKVHAEQVLNDKENHIKTLTGHLPMMKDQA AVLEEDTTDDDNLELEVNSQWENGANLDDPLKGALKKLIHAAKLNVSLKSLEGERNHIIIQLSEVDKTKE ELTEHIKNLQTQQASLQSENIYFESENQKLQQKLKIMTEFYQENEMKLYRKLTVEENYRIEEEEKLSRVE EKISRATEGLETYRKLAKDLEEELERTVHFYQKQVISYEKRGHDNWLAARTAERNLSDLRKENAHNKQKL TETELKFELLEKDPNALDVSNTAFGREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVLPGGGGRG PSSPGNPLDHQITNERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRMMFPPPGQSYPDSTLPPQREDRFY SNSERLSGPAEPRSFKMTSLDKMDRSMPSEMESSRNDAKDDLGNLNVPDSSLPAENEATGPGLIPPPLAP ISGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGPPHAPFAMRNIYPPRGLPPYLHPRPG FYPNPTF
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