NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56734.1 Public Mus musculus 10 Cbarp 23 108 98 CCDS HistoryNCBI Gene:100503659Re-query CCDS DB by CCDS ID:56734.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105369.7 ENSMUSP00000101008.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105369.7Link to Ensembl Protein Viewer:ENSMUSP00000101008.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105369Re-query CCDS DB by Protein ID:ENSMUSP00000101008
Original member Current member EBI ENSMUST00000170219.8 ENSMUSP00000131487.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170219.8Link to Ensembl Protein Viewer:ENSMUSP00000131487.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170219Re-query CCDS DB by Protein ID:ENSMUSP00000131487
Original member NCBI NM_001195268.1 NP_001182197.1 Updated not alive Link to Nucleotide Sequence:NM_001195268.1Link to Protein Sequence:NP_001182197.1Re-query CCDS DB by Nucleotide ID:NM_001195268Re-query CCDS DB by Protein ID:NP_001182197
Current member NCBI NM_001195268.2 NP_001182197.1 Accepted alive Link to Nucleotide Sequence:NM_001195268.2Link to Protein Sequence:NP_001182197.1Re-query CCDS DB by Nucleotide ID:NM_001195268Re-query CCDS DB by Protein ID:NP_001182197Link to BLAST:NP_001182197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182197.1 698 Q66L44 698 100% 0 0

Chromosomal Locations for CCDS 56734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80131288 80132251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80133005 80133185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80134561 80134768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80135118 80135246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80135375 80135546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80136350 80136494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80136874 80136938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80137043 80137182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80137288 80137380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGCAGCCCACGGCCACCATGGCCACAGCGGCCGCCACTACCGCCACTGTTGCCCTGACGACTTCGTGGG
ACAATGCCACCAGCCGCCCCACGGCGGAGCCTGACCCCATCTTGGACAACTATGTGCTGCTGGTGGTGGT
GATGTCGCTGTTCGTTGGAGGCACGCTGGTGGTGCTGTCTGGCGTTCTTCTGCTCTGCAAACGCTGCTGG
GAGGTGCACCAGCGCTTCAACAGGGCCATGGAGGAAGCAGAGAAGACCACCACTACTTATCTGGACAACG
GCACCCACCCTATACAAGACCCCGACTGCAGGGGGGAAGACCCCGAGGGCCAGGACACCGAAACAGAGCG
CTTCCTAGCCACCAGCTCCACCGGCCGCCGCGTGTCCTTCAACGAGGCTGCCCTGTTTGAACAGAGCCGC
AAGGCTCAGGACAAGGGCCGCCGGTACACCCTGACAGAAGGGGATTTCCATCACCTCAAGAATGCCCGCC
TCACCCACCTCCACCTACCGCCCCTCAAAATCGCTACTATCCATGAGTGTGATTCGGGGGAGGCCAGTGC
AGCGGCCACACCCCACCCAGCTACCACCTCCAAGGACAGCTTGGCTATTTTCCAGCCCCCTGGGAAAACC
CTCACCGGCCACTCAGTCGGCCCCAGCTCCGCCCTGCCAGGAGGTCCCTACAACTCCGTGGACTTCTCAG
AGATCAGCCCCTCAACCTCCAGTGACTCTGGGGAGGGCATTTCGTTAGATGCAGGTACCCGGGGTGCCAA
GGCTGCTGGGCCTGAAACAGTGCCTGGGGAGATGGGCACAGGCTCCTCCGGGTCGGGCACTGTTTTGCAA
TTCTTCACTCGGCTACGCCGACATGCCAGCCTGGATGGAGCCAGCCCCTACTTCAAGGTCAAGAAATGGA
AGCTGGAGCCCAGCCAGAGAGCGTCCAGTCTGGACACGAGAGGTTCCCCTAAGAGGCACCACTTTCAGCG
GCAGCGGGCAGCCAGTGAGAGCATGGAGCAGGAGGGGGACGTCCCCCATGCCGACTTCATTCAGTACATT
GCCAGCGCAGGCGACTCGGTGGCCTTCCCACCCCCCCGCCCCTTTCTGGCCAGCCCCACCAGCCCGCCCC
CCACTCTCGGCAGGCTAGAGGCAGCAGAGGCGGCGGGAGGAGCGAGCCCTGAGACTCCTCCGGAGCATGG
CATCAGTTTGGGGCCCGAGCATGCGCAGCAGCAGGACCCGCAGCAAGAGCAGGACGCCGAGCATGCACAG
TGCAGCTACCGTGACCTGTGGAGCCTTCGTGCTTCGCTCGAGCTCCATGCAGCCACTGCATCGGACCACA
GCAGCAGCGGCAATGACCGCGACTCAGTGCGCAGCGGCGATAGCTCGGGCTCGGGTTCCGGAGGTGGAGG
GGCAGCACCCGCCTTCCCACCCCCTCCGGAGTCTCCACCTGCTTTGAGGCCTAAGGACGGCGAAGCCCGC
CGCCTGCTACAGATGGACAGTGGCTATGCGAGCATCGAGGGGCGCGGAGCAGGCGACGAAGTTTCAGAAC
TTCCTGCTCCAGCCCGCAGTCCTCCCCGCAGCCCGCGAGCCTGGCCACGCAGGCCGCGCCGCGATTACAG
CATCGACGAGAAGACGGACGCTCTTTTCCATGAGTTCCTGCGCCATGACCCTCATTTTGACGATGCACCG
CGTCACCGCACACGTGCACATCCTCACACTCATGCGCGGAAGCAATGGCAACAGAGAGGACGGCAGCACA
GCGACCCCGGTGGTGCACGTGCAGCCACGCCCCCTGGAGTGGCCCGCCCTACACGTGCGCCATTACGCCG
TGGGGACAGCGTTGATTGTCCTCCTGAAGGCCGTGCGCTGCCCATCACGGGTGATGACCCATCCATTCCT
GTCATCGAGGAGGAGCCTGGCGGTGGAGGCGGTGGTTGCCCAGGCTCTGGGTTGTGCGTTGAGCCCGCCG
GGGCCCTGCTAGACAAGCTAGCAGCCAGCCTCGACGAGAGACTCTTCTCTCCCCGTCTTGCTGAGCCAGT
TGCCTCATCCCAGGTGCTGATTGTCGCTGCTGCTGCCCCTACATCCCCTGACCACAGCCCGGCCTAA

Translation (698 aa):
MQPTATMATAAATTATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCW
EVHQRFNRAMEEAEKTTTTYLDNGTHPIQDPDCRGEDPEGQDTETERFLATSSTGRRVSFNEAALFEQSR
KAQDKGRRYTLTEGDFHHLKNARLTHLHLPPLKIATIHECDSGEASAAATPHPATTSKDSLAIFQPPGKT
LTGHSVGPSSALPGGPYNSVDFSEISPSTSSDSGEGISLDAGTRGAKAAGPETVPGEMGTGSSGSGTVLQ
FFTRLRRHASLDGASPYFKVKKWKLEPSQRASSLDTRGSPKRHHFQRQRAASESMEQEGDVPHADFIQYI
ASAGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGASPETPPEHGISLGPEHAQQQDPQQEQDAEHAQ
CSYRDLWSLRASLELHAATASDHSSSGNDRDSVRSGDSSGSGSGGGGAAPAFPPPPESPPALRPKDGEAR
RLLQMDSGYASIEGRGAGDEVSELPAPARSPPRSPRAWPRRPRRDYSIDEKTDALFHEFLRHDPHFDDAP
RHRTRAHPHTHARKQWQQRGRQHSDPGGARAATPPGVARPTRAPLRRGDSVDCPPEGRALPITGDDPSIP
VIEEEPGGGGGGCPGSGLCVEPAGALLDKLAASLDERLFSPRLAEPVASSQVLIVAAAAPTSPDHSPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH