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Report for CCDS11487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11487.1 Public Homo sapiens 17 GJC1 24 110 108 CCDS HistoryNCBI Gene:10052Re-query CCDS DB by CCDS ID:11487.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330514.4 ENSP00000333193.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330514.4Link to Ensembl Protein Viewer:ENSP00000333193.3Re-query CCDS DB by Nucleotide ID:ENST00000330514Re-query CCDS DB by Protein ID:ENSP00000333193
Original member Current member EBI ENST00000590758.3 ENSP00000466339.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590758.3Link to Ensembl Protein Viewer:ENSP00000466339.1Re-query CCDS DB by Nucleotide ID:ENST00000590758Re-query CCDS DB by Protein ID:ENSP00000466339
Original member Current member EBI ENST00000592524.6 ENSP00000467201.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000592524.6Link to Ensembl Protein Viewer:ENSP00000467201.1Re-query CCDS DB by Nucleotide ID:ENST00000592524Re-query CCDS DB by Protein ID:ENSP00000467201
Original member Current member NCBI NM_001080383.2 NP_001073852.1 Accepted alive Link to Nucleotide Sequence:NM_001080383.2Link to Protein Sequence:NP_001073852.1Re-query CCDS DB by Nucleotide ID:NM_001080383Re-query CCDS DB by Protein ID:NP_001073852Link to BLAST:NP_001073852.1
Original member Current member NCBI NM_005497.4 NP_005488.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005497.4Link to Protein Sequence:NP_005488.2Re-query CCDS DB by Nucleotide ID:NM_005497Re-query CCDS DB by Protein ID:NP_005488Link to BLAST:NP_005488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073852.1 396 P36383 396 100% 0 0
NP_005488.2 396 P36383 396 100% 0 0

Chromosomal Locations for CCDS 11487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44804627 44805817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGAGTTGGAGCTTCCTGACTCGCCTGCTAGAGGAGATTCACAACCATTCCACATTTGTGGGGAAGATCT
GGCTCACTGTTCTGATTGTCTTCCGGATCGTCCTTACAGCTGTAGGAGGAGAATCCATCTATTACGATGA
GCAAAGCAAATTTGTGTGCAACACAGAACAGCCGGGCTGTGAGAATGTCTGTTATGATGCGTTTGCACCT
CTCTCCCATGTACGCTTCTGGGTGTTCCAGATCATCCTGGTGGCAACTCCCTCTGTGATGTACCTGGGCT
ATGCTATCCACAAGATTGCCAAAATGGAGCACGGTGAAGCAGACAAGAAGGCAGCTCGGAGCAAGCCCTA
TGCAATGCGCTGGAAACAACACCGGGCTCTGGAAGAAACGGAGGAGGACAACGAAGAGGATCCTATGATG
TATCCAGAGATGGAGTTAGAAAGTGATAAGGAAAATAAAGAGCAGAGCCAACCCAAACCTAAGCATGATG
GCCGACGACGGATTCGGGAAGATGGGCTCATGAAAATCTATGTGCTGCAGTTGCTGGCAAGGACCGTGTT
TGAGGTGGGTTTTCTGATAGGGCAGTATTTTCTGTATGGCTTCCAAGTCCACCCGTTTTATGTGTGCAGC
AGACTTCCTTGTCCTCATAAGATAGACTGCTTTATTTCTAGACCCACTGAAAAGACCATCTTCCTTCTGA
TAATGTATGGTGTTACAGGCCTTTGCCTCTTGCTTAACATTTGGGAGATGCTTCATTTAGGGTTTGGGAC
CATTCGAGACTCACTAAACAGTAAAAGGAGGGAACTTGAGGATCCGGGTGCTTATAATTATCCTTTCACT
TGGAATACACCATCTGCTCCCCCTGGCTATAACATTGCTGTCAAACCAGATCAAATCCAGTACACCGAAC
TGTCCAATGCTAAGATCGCCTACAAGCAAAACAAGGCCAACACAGCCCAGGAACAGCAGTATGGCAGCCA
TGAGGAGAACCTCCCAGCTGACCTGGAGGCTCTGCAGCGGGAGATCAGGATGGCTCAGGAACGCTTGGAT
CTGGCAGTTCAGGCCTACAGTCACCAAAACAACCCTCATGGTCCCCGGGAGAAGAAGGCCAAAGTGGGGT
CCAAAGCTGGGTCCAACAAAAGCACTGCCAGTAGCAAATCAGGGGATGGGAAGACCTCCGTCTGGATTTA
A

Translation (396 aa):
MSWSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCENVCYDAFAP
LSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWKQHRALEETEEDNEEDPMM
YPEMELESDKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLLARTVFEVGFLIGQYFLYGFQVHPFYVCS
RLPCPHKIDCFISRPTEKTIFLLIMYGVTGLCLLLNIWEMLHLGFGTIRDSLNSKRRELEDPGAYNYPFT
WNTPSAPPGYNIAVKPDQIQYTELSNAKIAYKQNKANTAQEQQYGSHEENLPADLEALQREIRMAQERLD
LAVQAYSHQNNPHGPREKKAKVGSKAGSNKSTASSKSGDGKTSVWI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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