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Report for CCDS36540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36540.1 Public Mus musculus 12 Clmn 23 108 98 CCDS HistoryNCBI Gene:94040Re-query CCDS DB by CCDS ID:36540.1Re-query CCDS DB by GeneID:94040See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109936.2 ENSMUSP00000105562.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109936.2Link to Ensembl Protein Viewer:ENSMUSP00000105562.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109936Re-query CCDS DB by Protein ID:ENSMUSP00000105562
Original member Current member NCBI NM_001040682.1 NP_001035772.1 Accepted alive Link to Nucleotide Sequence:NM_001040682.1Link to Protein Sequence:NP_001035772.1Re-query CCDS DB by Nucleotide ID:NM_001040682Re-query CCDS DB by Protein ID:NP_001035772Link to BLAST:NP_001035772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035772.1 1021 Q8C5W0-4 1021 100% 0 0

Chromosomal Locations for CCDS 36540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104771792 104771963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104773773 104773843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104774489 104774549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104776945 104777141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104780722 104782401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104783907 104783989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104785393 104785586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104789982 104790172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104791839 104791931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104797042 104797125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104800477 104800572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104804609 104804670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104864870 104864951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3066 nt):
ATGGCTGCTCAGGAGTGGGACTGGTTCCAGCGCGAGGAGCTCATCGGGCAGATCAGCGACATCCGTGTGC
AAAACCTGCAAGTGGAGAGGGAAAACGTGCAGAAGAGGACTTTCACACGATGGATAAACCTACACCTCGA
AAAGTGTGACCCACCTCTAGAAGTTACGGACCTGTTTGTTGATATTCAAGATGGCAAAATCCTAATGGCT
CTGTTAGAAGTCCTCTCTGGGCGAAATCTGCTGCATGAATACAAATCCTCATCACATCGTATTTTTCGGT
TGAACAACATAGCGAAAGCACTCAAGTTTCTGGAAGATAGCAATGTCAAGCTGGTTAGCATCGATGCAGC
GGAAATAGCGGACGGCAACCCCTCGCTGGTTCTCGGGCTGATATGGAACATCATTCTCTTCTTCCAGATA
AAGGAGCTCACGGGCAACCTCAGCAGGAGTTCTCCATCTTCCAGCTTGTCACCGGGCTCTGGGGGCACCG
ACTCCGACTCTTCCTACCCACCCACCCCCACCACCGAGAGGAGTGTGGCAGTGGCAGTGAAAGACCAGAG
GAAGGCCATCAAGACCCTGCTGTCATGGGTGCAGAGGAAAACCAGGAAGTATGGTGTGGCAGTCCAAGAC
TTTGCAGGCAGCTGGAGGAGTGGCCTGGCTTTCCTGGCTGTCATCAAAGCTATTGACCCCAGCCTTGTAG
ACATGAAGCAGGCTCTGGAAGATTCCACCCGGGACAATCTGGAAAAGGCCTTCAGCATTGCCCATGATTC
CCTGCATATCCCGAGGCTCCTGGAGCCGGAAGACATCATGGTTGACATGCCAGATGAGCAGTCCATTGTG
ACATACGTGGCCCAGTTTCTAGAGCGCTTTCCAGAGTTGGAGCCTGAAGATTTTGTGAATCCGGACAAAG
AAGCCCCCATCGAGTCCACCTTTGTCCGCATCAAAGAAAGCCCCTCTGAGCAGGGGAGCAGAGTCCTCCT
CCTCAGCGAGAACGGAGAGCGGGCCTACACTGTCAACCAGGAAACCAGCTACCCGCCGCCTGACAAGGTC
TTCGTCTGTGACCAGCTTGAGAGTCCGACTGGCTTCTGTCTGGATAGTGCTCCCAGCCACAAACTGTCAG
ACAGCTCCACAGAGTTTATGCATGAGATTATTGACCAAGTCCTCCAGGGGAGCACGGGGAAGACTGGCTC
CATCGCAGAGCCAACTCCAGAGTCGTCCATTTTGTCAACCAGAAAGGACGGCAGGAGGTCCAACTCTTTG
CCTGTCAAGAAAACCGTCCACTTCGAGGCAGACTTGCACAAGGATGCCTCGTGTAGTAAGGACCCTTTCT
ATAGCTCTGACTTCCGCTTCGAGGGGAGCCCCAAGGCAACCAAGGAGCTGTCAAAGCAGGACGGCCATGT
CTCACTGGCTGAGGTGTCCAAGGAAAAGAAGAAGTCAGAACAGGAAGCCAGGCTAGTGCTGGAAGCTGCC
TCAGACAAGGTCCCCGAAAGCACGGTCGATGGTCTGGATGCTGTGCCCCAAGATGCTCAGCCTTCCCAGG
ACTCCTCCTTCTGTAACGGCACTGTAGAGAGCCCATCCAGCCAAGGTGAGAAAGGCCCTCCTCCATCATC
CCCTGGAGATCATACTCTCCTGGCCAACTCCACTGAGCTCAAGGTTCAGCTGCTGACCGTTGAGCCTATG
GACAAGGAAGACTACTTTGAATGCATCCCACTAAAAGCTTCAAAGTTTAACAGGGACCTAGTGGATTTCG
CCTCCACCAGCCAGGCTTTTGGTGAGGATCCTTCGTCCCACGAGAAGACCCGTGGGGAGGAAGAGGGTTC
TGAGAATCACGCTGAGAAACCAGGGAAAAGGAAATCAAAGTCTCCCCGTGCAGAAACAGAGGCCGCCGAG
TCCAGATTGGAGCCCAAGAAGCTCGAGCCTCCTCCCAAGGATCCCGAACAAGAAGACCAAGGCCACGCTT
TGCCCCCGGAAACCCCTGCAGACAAAAAGCCCAAAGTGTATGAAAAGGCCAAGAGAAAGTCCACTCGTCA
TCACAGCGAGGAAGAAGGAGAAGCAGAAAGTGGCTTCTCTGCAGTCTGTGAAGAAGAAATACCATCCGCC
CCTCCCAGCACCAGCGTCAGCCTGGAAACCCTCAGGAGTCACAGCGAAGAAGGTTTGGATTTCAAACCTT
CGCCGCCGCTCTCGAAGATCTCTGTCATCCCCCACGACCTGTTCTACTACCCTCACTACGAAGTGCCCCT
GGCCGCTGTGCTGGAGGCTTACGCGGAAGGCGGGGAGGATTTGAAAAGTGAAGACACAGACCTAGAGCAT
CCAGAGGACAGCTATCTGCAGGACTCCAGGGAGGAGGAGGCCGACGAGGACGAGGAGGAGGCCCAGAGCT
CTCAAAGCAGCTGCAGTTTCTCCTTGCCTGTTGACAACAGCTACCCCAGCGTCAGTGAGCATGTGTCCCA
TGTCGATGGGAGTTCTGAGGGACCCACGTCAGCCTTGGGACCTGGCTCTCCACCCTCTCATGAGGACCAC
CAGCCAAAGGAAACCAAAGAGAATGGCCCTGTGGAAAGCCAGCAGTCCCAAGAACCCCCAAACCCGGAAC
TGCCCACAAAGCCATTAGAAGAAAAGTTAACGGAAGCCTCAACTAGCAGTAAAAAGAAGGAAAAACGGAA
ACACATGGACCACGTAGAAAGCTCATTATTTATAGCCCCTGGGACGGTCCGCTCCTCAGACGACCTTGAA
GAAAACTCCAGCGAACACAAGGTCCCTTCCAGGAATAGTCACAGTGACTCCAGCATTTACATTCGGCGAC
ACACTAATAGGTCTTTGGAATTGGACCATTTTAGCTATGTTCAATTGAGGAACGCAGCTGATCTGGATGA
CAGGAGAAACAGAGTGTTAAACAGGACTGGCACCAACTCCTCTGGAGAAGCTGTGCCCCTGGGGAACCAG
AGCCCGCCCAACGACTCTCTGACGCAGTTTGTACAGCAGCCCGACGTGATATATTTCATTCTCTTCCTCT
GGCTCCTCGTTTACTGCTTACTGCTCTTCCCACAGCTTGATGTCAGCCGGCTCTGA

Translation (1021 aa):
MAAQEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINLHLEKCDPPLEVTDLFVDIQDGKILMA
LLEVLSGRNLLHEYKSSSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQI
KELTGNLSRSSPSSSLSPGSGGTDSDSSYPPTPTTERSVAVAVKDQRKAIKTLLSWVQRKTRKYGVAVQD
FAGSWRSGLAFLAVIKAIDPSLVDMKQALEDSTRDNLEKAFSIAHDSLHIPRLLEPEDIMVDMPDEQSIV
TYVAQFLERFPELEPEDFVNPDKEAPIESTFVRIKESPSEQGSRVLLLSENGERAYTVNQETSYPPPDKV
FVCDQLESPTGFCLDSAPSHKLSDSSTEFMHEIIDQVLQGSTGKTGSIAEPTPESSILSTRKDGRRSNSL
PVKKTVHFEADLHKDASCSKDPFYSSDFRFEGSPKATKELSKQDGHVSLAEVSKEKKKSEQEARLVLEAA
SDKVPESTVDGLDAVPQDAQPSQDSSFCNGTVESPSSQGEKGPPPSSPGDHTLLANSTELKVQLLTVEPM
DKEDYFECIPLKASKFNRDLVDFASTSQAFGEDPSSHEKTRGEEEGSENHAEKPGKRKSKSPRAETEAAE
SRLEPKKLEPPPKDPEQEDQGHALPPETPADKKPKVYEKAKRKSTRHHSEEEGEAESGFSAVCEEEIPSA
PPSTSVSLETLRSHSEEGLDFKPSPPLSKISVIPHDLFYYPHYEVPLAAVLEAYAEGGEDLKSEDTDLEH
PEDSYLQDSREEEADEDEEEAQSSQSSCSFSLPVDNSYPSVSEHVSHVDGSSEGPTSALGPGSPPSHEDH
QPKETKENGPVESQQSQEPPNPELPTKPLEEKLTEASTSSKKKEKRKHMDHVESSLFIAPGTVRSSDDLE
ENSSEHKVPSRNSHSDSSIYIRRHTNRSLELDHFSYVQLRNAADLDDRRNRVLNRTGTNSSGEAVPLGNQ
SPPNDSLTQFVQQPDVIYFILFLWLLVYCLLLFPQLDVSRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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