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Report for CCDS13321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13321.1 Public Homo sapiens 20 SGK2 24 110 108 CCDS HistoryNCBI Gene:10110Re-query CCDS DB by CCDS ID:13321.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13321.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341458.10 ENSP00000340608.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341458.10Link to Ensembl Protein Viewer:ENSP00000340608.5Re-query CCDS DB by Nucleotide ID:ENST00000341458Re-query CCDS DB by Protein ID:ENSP00000340608
Original member Current member EBI ENST00000373100.7 ENSP00000362192.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373100.7Link to Ensembl Protein Viewer:ENSP00000362192.1Re-query CCDS DB by Nucleotide ID:ENST00000373100Re-query CCDS DB by Protein ID:ENSP00000362192
Original member Current member EBI ENST00000423407.7 ENSP00000392795.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423407.7Link to Ensembl Protein Viewer:ENSP00000392795.3Re-query CCDS DB by Nucleotide ID:ENST00000423407Re-query CCDS DB by Protein ID:ENSP00000392795
Original member Current member EBI ENST00000426287.3 ENSP00000412214.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426287.3Link to Ensembl Protein Viewer:ENSP00000412214.2Re-query CCDS DB by Nucleotide ID:ENST00000426287Re-query CCDS DB by Protein ID:ENSP00000412214
Original member Current member NCBI NM_001199264.2 NP_001186193.1 Accepted alive Link to Nucleotide Sequence:NM_001199264.2Link to Protein Sequence:NP_001186193.1Re-query CCDS DB by Nucleotide ID:NM_001199264Re-query CCDS DB by Protein ID:NP_001186193Link to BLAST:NP_001186193.1
Original member Current member NCBI NM_016276.5 NP_057360.3 Accepted alive Link to Nucleotide Sequence:NM_016276.5Link to Protein Sequence:NP_057360.3Re-query CCDS DB by Nucleotide ID:NM_016276Re-query CCDS DB by Protein ID:NP_057360Link to BLAST:NP_057360.3
Original member Current member NCBI NM_170693.3 NP_733794.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170693.3Link to Protein Sequence:NP_733794.1Re-query CCDS DB by Nucleotide ID:NM_170693Re-query CCDS DB by Protein ID:NP_733794Link to BLAST:NP_733794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186193.1 367 Q9HBY8-2 367 100% 0 0
NP_057360.3 367 Q9HBY8-2 367 100% 0 0
NP_733794.1 367 Q9HBY8-2 367 100% 0 0

Chromosomal Locations for CCDS 13321.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43566496 43566531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43567068 43567117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43567665 43567722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43567916 43567999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43569385 43569516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43570617 43570729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43571024 43571060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43572051 43572137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43574909 43575004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43576224 43576379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43579972 43580061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43584852 43585016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAACTCTAGCCCAGCTGGGACCCCAAGTCCACAGCCCTCCAGGGCCAATGGGAACATCAACCTGGGGC
CTTCAGCCAACCCAAATGCCCAGCCCACGGACTTCGACTTCCTCAAAGTCATCGGCAAAGGGAACTACGG
GAAGGTCCTACTGGCCAAGCGCAAGTCTGATGGGGCGTTCTATGCAGTGAAGGTACTACAGAAAAAGTCC
ATCTTAAAGAAGAAAGAGCAGAGCCACATCATGGCAGAGCGCAGTGTGCTTCTGAAGAACGTGCGGCACC
CCTTCCTCGTGGGCCTGCGCTACTCCTTCCAGACACCTGAGAAGCTCTACTTCGTGCTCGACTATGTCAA
CGGGGGAGAGCTCTTCTTCCACCTGCAGCGGGAGCGCCGGTTCCTGGAGCCCCGGGCCAGGTTCTACGCT
GCTGAGGTGGCCAGCGCCATTGGCTACCTGCACTCCCTCAACATCATTTACAGGGATCTGAAACCAGAGA
ACATTCTCTTGGACTGCCAGGGACACGTGGTGCTGACGGATTTTGGCCTCTGCAAGGAAGGTGTAGAGCC
TGAAGACACCACATCCACATTCTGTGGTACCCCTGAGTACTTGGCACCTGAAGTGCTTCGGAAAGAGCCT
TATGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGTCCTCTACGAGATGCTCCATGGCCTGCCGCCCT
TCTACAGCCAAGATGTATCCCAGATGTATGAGAACATTCTGCACCAGCCGCTACAGATCCCCGGAGGCCG
GACAGTGGCCGCCTGTGACCTCCTGCAAAGCCTTCTCCACAAGGACCAGAGGCAGCGGCTGGGCTCCAAA
GCAGACTTTCTTGAGATTAAGAACCATGTATTCTTCAGCCCCATAAACTGGGATGACCTGTACCACAAGA
GGCTAACTCCACCCTTCAACCCAAATGTGACAGGACCTGCTGACTTGAAGCATTTTGACCCAGAGTTCAC
CCAGGAAGCTGTGTCCAAGTCCATTGGCTGTACCCCTGACACTGTGGCCAGCAGCTCTGGGGCCTCAAGT
GCATTCCTGGGATTTTCTTATGCGCCAGAGGATGATGACATCTTGGATTGCTAG

Translation (367 aa):
MNSSPAGTPSPQPSRANGNINLGPSANPNAQPTDFDFLKVIGKGNYGKVLLAKRKSDGAFYAVKVLQKKS
ILKKKEQSHIMAERSVLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGELFFHLQRERRFLEPRARFYA
AEVASAIGYLHSLNIIYRDLKPENILLDCQGHVVLTDFGLCKEGVEPEDTTSTFCGTPEYLAPEVLRKEP
YDRAVDWWCLGAVLYEMLHGLPPFYSQDVSQMYENILHQPLQIPGGRTVAACDLLQSLLHKDQRQRLGSK
ADFLEIKNHVFFSPINWDDLYHKRLTPPFNPNVTGPADLKHFDPEFTQEAVSKSIGCTPDTVASSSGASS
AFLGFSYAPEDDDILDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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