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Report for CCDS34233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34233.1 Public Homo sapiens 5 RAD50 24 110 108 CCDS HistoryNCBI Gene:10111Re-query CCDS DB by CCDS ID:34233.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34233.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378823.8 ENSP00000368100.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378823.8Link to Ensembl Protein Viewer:ENSP00000368100.4Re-query CCDS DB by Nucleotide ID:ENST00000378823Re-query CCDS DB by Protein ID:ENSP00000368100
Original member Current member NCBI NM_005732.4 NP_005723.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005732.4Link to Protein Sequence:NP_005723.2Re-query CCDS DB by Nucleotide ID:NM_005732Re-query CCDS DB by Protein ID:NP_005723Link to BLAST:NP_005723.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005723.2 1312 Q92878-1 1312 100% 0 0

Chromosomal Locations for CCDS 34233.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132557325 132557453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132559284 132559367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132575777 132575928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132579317 132579502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132579862 132580066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132587562 132587690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132587924 132588089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132588687 132588880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132589631 132589837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132591224 132591406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132591877 132592034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132594869 132595044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132595573 132595810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132603300 132603489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132603920 132604046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132604806 132604999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132608615 132608725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132609117 132609209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132609283 132609396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132616003 132616130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132618070 132618294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132637115 132637200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132638081 132638223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132640672 132640805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132642178 132642364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3939 nt):
ATGTCCCGGATCGAAAAGATGAGCATTCTGGGCGTGCGGAGTTTTGGAATAGAGGACAAAGATAAGCAAA
TTATCACTTTCTTCAGCCCCCTTACAATTTTGGTTGGACCCAATGGGGCGGGAAAGACGACCATCATTGA
ATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCC
AAGGTTGCTCAAGAAACAGATGTGAGAGCCCAGATTCGTCTGCAATTTCGTGATGTCAATGGAGAACTTA
TAGCTGTGCAAAGATCTATGGTGTGTACTCAGAAAAGCAAAAAGACAGAATTTAAAACTCTGGAAGGAGT
CATTACTAGAACAAAGCATGGTGAAAAGGTCAGTCTGAGCTCTAAGTGTGCAGAAATTGACCGAGAAATG
ATCAGTTCTCTTGGGGTTTCCAAGGCTGTGCTAAATAATGTCATTTTCTGTCATCAAGAAGATTCTAATT
GGCCTTTAAGTGAAGGAAAGGCTTTGAAGCAAAAGTTTGATGAGATTTTTTCAGCAACAAGATACATTAA
AGCCTTAGAAACACTTCGGCAGGTACGTCAGACACAAGGTCAGAAAGTAAAAGAATATCAAATGGAACTA
AAATATCTGAAGCAATATAAGGAAAAAGCTTGTGAGATTCGTGATCAGATTACAAGTAAGGAAGCCCAGT
TAACATCTTCAAAGGAAATTGTCAAATCCTATGAGAATGAACTTGATCCATTGAAGAATCGTCTAAAAGA
AATTGAACATAATCTCTCTAAAATAATGAAACTTGACAATGAAATTAAAGCCTTGGATAGCCGAAAGAAG
CAAATGGAGAAAGATAATAGTGAACTGGAAGAGAAAATGGAAAAGGTTTTTCAAGGGACTGATGAGCAAC
TAAATGACTTATATCACAATCACCAGAGAACAGTAAGGGAGAAAGAAAGGAAATTGGTAGACTGTCATCG
TGAACTGGAAAAACTAAATAAAGAATCTAGGCTTCTCAATCAGGAAAAATCAGAACTGCTTGTTGAACAG
GGTCGTCTACAGCTGCAAGCAGATCGCCATCAAGAACATATCCGAGCTAGAGATTCATTAATTCAGTCTT
TGGCAACACAGCTAGAATTGGATGGCTTTGAGCGTGGACCATTCAGTGAAAGACAGATTAAAAATTTTCA
CAAACTTGTGAGAGAGAGACAAGAAGGGGAAGCAAAAACTGCCAACCAACTGATGAATGACTTTGCAGAA
AAAGAGACTCTGAAACAAAAACAGATAGATGAGATAAGAGATAAGAAAACTGGACTGGGAAGAATAATTG
AGTTAAAATCAGAAATCCTAAGTAAGAAGCAGAATGAGCTGAAAAATGTGAAGTATGAATTACAGCAGTT
GGAAGGATCTTCAGACAGGATTCTTGAACTGGACCAGGAGCTCATAAAAGCTGAACGTGAGTTAAGCAAG
GCTGAGAAAAACAGCAATGTAGAAACCTTAAAAATGGAAGTAATAAGTCTCCAAAATGAAAAAGCAGACT
TAGACAGGACCCTGCGTAAACTTGACCAGGAGATGGAGCAGTTAAACCATCATACAACAACACGTACCCA
AATGGAGATGCTGACCAAAGACAAAGCTGACAAAGATGAACAAATCAGAAAAATAAAATCTAGGCACAGT
GATGAATTAACCTCACTGTTGGGATATTTTCCCAACAAAAAACAGCTTGAAGACTGGCTACATAGTAAAT
CAAAAGAAATTAATCAGACCAGGGACAGACTTGCCAAATTGAACAAGGAACTAGCTTCATCTGAGCAGAA
TAAAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAGTTGTCCAGTTACGAAGACAAGCTGTTT
GATGTTTGTGGTAGCCAGGATTTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAA
AACAGCGAGCCATGCTGGCTGGAGCCACAGCAGTTTACTCCCAGTTCATTACTCAGCTAACAGACGAAAA
CCAGTCATGTTGCCCCGTTTGTCAGAGAGTTTTTCAGACAGAGGCTGAGTTACAAGAAGTCATCAGTGAT
TTGCAGTCTAAACTGCGACTTGCTCCAGATAAACTCAAGTCAACAGAATCAGAGCTAAAAAAAAAGGAAA
AGCGGCGTGATGAAATGCTGGGACTTGTGCCCATGAGGCAAAGCATAATTGATTTGAAGGAGAAGGAAAT
ACCAGAATTAAGAAACAAACTGCAGAATGTCAATAGAGACATACAGCGCCTAAAGAACGACATAGAAGAA
CAAGAAACACTCTTGGGTACAATAATGCCTGAAGAAGAAAGTGCCAAAGTATGCCTGACAGATGTTACAA
TTATGGAGAGGTTCCAGATGGAACTTAAAGATGTTGAAAGAAAAATTGCACAACAAGCAGCTAAGCTACA
AGGAATAGACTTAGATCGAACTGTCCAACAAGTCAACCAGGAGAAACAAGAGAAACAGCACAAGTTAGAC
ACAGTTTCTAGTAAGATTGAATTGAATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACATCTAA
AAAGTACAACAAATGAGCTAAAATCTGAGAAACTTCAGATATCCACTAATTTGCAACGTCGTCAGCAACT
GGAGGAGCAGACTGTGGAATTATCCACTGAAGTTCAGTCTTTGTACAGAGAGATAAAGGATGCTAAAGAG
CAGGTAAGCCCTTTGGAAACAACATTGGAAAAGTTCCAGCAAGAAAAAGAAGAATTAATCAACAAAAAAA
ATACAAGCAACAAAATAGCACAGGATAAACTGAATGATATTAAAGAGAAGGTTAAAAATATTCATGGCTA
TATGAAAGACATTGAGAATTATATTCAAGATGGGAAAGACGACTATAAGAAGCAAAAAGAAACTGAACTT
AATAAAGTAATAGCTCAACTAAGTGAATGCGAGAAACACAAAGAAAAGATAAATGAAGATATGAGACTCA
TGAGACAAGATATTGATACACAGAAGATACAAGAAAGGTGGCTACAAGATAACCTTACTTTAAGAAAAAG
AAATGAGGAACTAAAAGAAGTTGAAGAAGAAAGAAAACAACATTTGAAGGAAATGGGTCAAATGCAGGTT
TTGCAAATGAAAAGTGAACATCAGAAGTTGGAAGAGAACATAGACAATATAAAAAGAAATCATAATTTGG
CATTAGGGCGACAGAAAGGTTATGAAGAAGAAATTATTCATTTTAAGAAAGAACTTCGAGAACCACAATT
TCGGGATGCTGAGGAAAAGTATAGAGAAATGATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGAT
CTGGATATTTATTATAAGACTCTTGACCAAGCAATAATGAAATTTCACAGTATGAAAATGGAAGAAATCA
ATAAAATTATACGTGACCTGTGGCGAAGTACCTATCGTGGACAAGATATTGAATACATAGAAATACGGTC
TGATGCCGATGAAAATGTATCAGCTTCTGATAAAAGGCGGAATTATAACTACCGAGTGGTGATGCTGAAG
GGAGACACAGCCTTGGATATGCGAGGACGATGCAGTGCTGGACAAAAGGTATTAGCCTCACTCATCATTC
GCCTGGCCCTGGCTGAAACGTTCTGCCTCAACTGTGGCATCATTGCCTTGGATGAGCCAACAACAAATCT
TGACCGAGAAAACATTGAATCTCTTGCACATGCTCTGGTTGAGATAATAAAAAGTCGCTCACAGCAGCGT
AACTTCCAGCTTCTGGTAATCACTCATGATGAAGATTTTGTGGAGCTTTTAGGACGTTCTGAATATGTGG
AGAAATTCTACAGGATTAAAAAGAACATCGATCAGTGCTCAGAGATTGTGAAATGCAGTGTTAGCTCCCT
GGGATTCAATGTTCATTAA

Translation (1312 aa):
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDP
KVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKTEFKTLEGVITRTKHGEKVSLSSKCAEIDREM
ISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMEL
KYLKQYKEKACEIRDQITSKEAQLTSSKEIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRKK
QMEKDNSELEEKMEKVFQGTDEQLNDLYHNHQRTVREKERKLVDCHRELEKLNKESRLLNQEKSELLVEQ
GRLQLQADRHQEHIRARDSLIQSLATQLELDGFERGPFSERQIKNFHKLVRERQEGEAKTANQLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQELIKAERELSK
AEKNSNVETLKMEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEMLTKDKADKDEQIRKIKSRHS
DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASSEQNKNHINNELKRKEEQLSSYEDKLF
DVCGSQDFESDLDRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISD
LQSKLRLAPDKLKSTESELKKKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEE
QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKDAKE
QVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKNIHGYMKDIENYIQDGKDDYKKQKETEL
NKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRNEELKEVEEERKQHLKEMGQMQV
LQMKSEHQKLEENIDNIKRNHNLALGRQKGYEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD
LDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLK
GDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGFNVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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