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Report for CCDS1852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1852.1 Public Homo sapiens 2 RTN4 24 110 108 CCDS HistoryNCBI Gene:57142Re-query CCDS DB by CCDS ID:1852.1Re-query CCDS DB by GeneID:57142See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357376.7 ENSP00000349944.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357376.7Link to Ensembl Protein Viewer:ENSP00000349944.3Re-query CCDS DB by Nucleotide ID:ENST00000357376Re-query CCDS DB by Protein ID:ENSP00000349944
Original member Current member EBI ENST00000394611.6 ENSP00000378109.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394611.6Link to Ensembl Protein Viewer:ENSP00000378109.2Re-query CCDS DB by Nucleotide ID:ENST00000394611Re-query CCDS DB by Protein ID:ENSP00000378109
Original member Current member EBI ENST00000405240.5 ENSP00000384471.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405240.5Link to Ensembl Protein Viewer:ENSP00000384471.1Re-query CCDS DB by Nucleotide ID:ENST00000405240Re-query CCDS DB by Protein ID:ENSP00000384471
Original member Current member EBI ENST00000404909.5 ENSP00000385650.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404909.5Link to Ensembl Protein Viewer:ENSP00000385650.1Re-query CCDS DB by Nucleotide ID:ENST00000404909Re-query CCDS DB by Protein ID:ENSP00000385650
Original member Current member NCBI NM_001321859.2 NP_001308788.1 Accepted alive Link to Nucleotide Sequence:NM_001321859.2Link to Protein Sequence:NP_001308788.1Re-query CCDS DB by Nucleotide ID:NM_001321859Re-query CCDS DB by Protein ID:NP_001308788Link to BLAST:NP_001308788.1
Original member Current member NCBI NM_001321860.1 NP_001308789.1 Accepted alive Link to Nucleotide Sequence:NM_001321860.1Link to Protein Sequence:NP_001308789.1Re-query CCDS DB by Nucleotide ID:NM_001321860Re-query CCDS DB by Protein ID:NP_001308789Link to BLAST:NP_001308789.1
Original member Current member NCBI NM_001321861.2 NP_001308790.1 Accepted alive Link to Nucleotide Sequence:NM_001321861.2Link to Protein Sequence:NP_001308790.1Re-query CCDS DB by Nucleotide ID:NM_001321861Re-query CCDS DB by Protein ID:NP_001308790Link to BLAST:NP_001308790.1
Original member Current member NCBI NM_001321862.2 NP_001308791.1 Accepted alive Link to Nucleotide Sequence:NM_001321862.2Link to Protein Sequence:NP_001308791.1Re-query CCDS DB by Nucleotide ID:NM_001321862Re-query CCDS DB by Protein ID:NP_001308791Link to BLAST:NP_001308791.1
Original member Current member NCBI NM_001321863.2 NP_001308792.1 Accepted alive Link to Nucleotide Sequence:NM_001321863.2Link to Protein Sequence:NP_001308792.1Re-query CCDS DB by Nucleotide ID:NM_001321863Re-query CCDS DB by Protein ID:NP_001308792Link to BLAST:NP_001308792.1
Original member Current member NCBI NM_001321904.2 NP_001308833.1 Accepted alive Link to Nucleotide Sequence:NM_001321904.2Link to Protein Sequence:NP_001308833.1Re-query CCDS DB by Nucleotide ID:NM_001321904Re-query CCDS DB by Protein ID:NP_001308833Link to BLAST:NP_001308833.1
Original member Current member NCBI NM_207521.2 NP_997404.1 Accepted alive Link to Nucleotide Sequence:NM_207521.2Link to Protein Sequence:NP_997404.1Re-query CCDS DB by Nucleotide ID:NM_207521Re-query CCDS DB by Protein ID:NP_997404Link to BLAST:NP_997404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308788.1 986 Q9NQC3-6 986 100% 0 0
NP_001308789.1 986 Q9NQC3-6 986 100% 0 0
NP_001308790.1 986 Q9NQC3-6 986 100% 0 0
NP_001308791.1 986 Q9NQC3-6 986 100% 0 0
NP_001308792.1 986 Q9NQC3-6 986 100% 0 0
NP_001308833.1 986 Q9NQC3-6 986 100% 0 0
NP_997404.1 986 Q9NQC3-6 986 100% 0 0

Chromosomal Locations for CCDS 1852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 54973156 54973198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54973563 54973621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54973821 54973867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54974695 54974764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54982515 54982653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54987491 54987698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55025086 55027480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2961 nt):
ATGGACTTGAAGGAGCAGCCAGGTAACACTATTTCGGCTGGTCAAGAGGATTTCCCATCTGTCCTGCTTG
AAACTGCTGCTTCTCTTCCTTCTCTGTCTCCTCTCTCAGCCGCTTCTTTCAAAGAACATGAATACCTTGG
TAATTTGTCAACAGTATTACCCACTGAAGGAACACTTCAAGAAAATGTCAGTGAAGCTTCTAAAGAGGTC
TCAGAGAAGGCAAAAACTCTACTCATAGATAGAGATTTAACAGAGTTTTCAGAATTAGAATACTCAGAAA
TGGGATCATCGTTCAGTGTCTCTCCAAAAGCAGAATCTGCCGTAATAGTAGCAAATCCTAGGGAAGAAAT
AATCGTGAAAAATAAAGATGAAGAAGAGAAGTTAGTTAGTAATAACATCCTTCATAATCAACAAGAGTTA
CCTACAGCTCTTACTAAATTGGTTAAAGAGGATGAAGTTGTGTCTTCAGAAAAAGCAAAAGACAGTTTTA
ATGAAAAGAGAGTTGCAGTGGAAGCTCCTATGAGGGAGGAATATGCAGACTTCAAACCATTTGAGCGAGT
ATGGGAAGTGAAAGATAGTAAGGAAGATAGTGATATGTTGGCTGCTGGAGGTAAAATCGAGAGCAACTTG
GAAAGTAAAGTGGATAAAAAATGTTTTGCAGATAGCCTTGAGCAAACTAATCACGAAAAAGATAGTGAGA
GTAGTAATGATGATACTTCTTTCCCCAGTACGCCAGAAGGTATAAAGGATCGTTCAGGAGCATATATCAC
ATGTGCTCCCTTTAACCCAGCAGCAACTGAGAGCATTGCAACAAACATTTTTCCTTTGTTAGGAGATCCT
ACTTCAGAAAATAAGACCGATGAAAAAAAAATAGAAGAAAAGAAGGCCCAAATAGTAACAGAGAAGAATA
CTAGCACCAAAACATCAAACCCTTTTCTTGTAGCAGCACAGGATTCTGAGACAGATTATGTCACAACAGA
TAATTTAACAAAGGTGACTGAGGAAGTCGTGGCAAACATGCCTGAAGGCCTGACTCCAGATTTAGTACAG
GAAGCATGTGAAAGTGAATTGAATGAAGTTACTGGTACAAAGATTGCTTATGAAACAAAAATGGACTTGG
TTCAAACATCAGAAGTTATGCAAGAGTCACTCTATCCTGCAGCACAGCTTTGCCCATCATTTGAAGAGTC
AGAAGCTACTCCTTCACCAGTTTTGCCTGACATTGTTATGGAAGCACCATTGAATTCTGCAGTTCCTAGT
GCTGGTGCTTCCGTGATACAGCCCAGCTCATCACCATTAGAAGCTTCTTCAGTTAATTATGAAAGCATAA
AACATGAGCCTGAAAACCCCCCACCATATGAAGAGGCCATGAGTGTATCACTAAAAAAAGTATCAGGAAT
AAAGGAAGAAATTAAAGAGCCTGAAAATATTAATGCAGCTCTTCAAGAAACAGAAGCTCCTTATATATCT
ATTGCATGTGATTTAATTAAAGAAACAAAGCTTTCTGCTGAACCAGCTCCGGATTTCTCTGATTATTCAG
AAATGGCAAAAGTTGAACAGCCAGTGCCTGATCATTCTGAGCTAGTTGAAGATTCCTCACCTGATTCTGA
ACCAGTTGACTTATTTAGTGATGATTCAATACCTGACGTTCCACAAAAACAAGATGAAACTGTGATGCTT
GTGAAAGAAAGTCTCACTGAGACTTCATTTGAGTCAATGATAGAATATGAAAATAAGGAAAAACTCAGTG
CTTTGCCACCTGAGGGAGGAAAGCCATATTTGGAATCTTTTAAGCTCAGTTTAGATAACACAAAAGATAC
CCTGTTACCTGATGAAGTTTCAACATTGAGCAAAAAGGAGAAAATTCCTTTGCAGATGGAGGAGCTCAGT
ACTGCAGTTTATTCAAATGATGACTTATTTATTTCTAAGGAAGCACAGATAAGAGAAACTGAAACGTTTT
CAGATTCATCTCCAATTGAAATTATAGATGAGTTCCCTACATTGATCAGTTCTAAAACTGATTCATTTTC
TAAATTAGCCAGGGAATATACTGACCTAGAAGTATCCCACAAAAGTGAAATTGCTAATGCCCCGGATGGA
GCTGGGTCATTGCCTTGCACAGAATTGCCCCATGACCTTTCTTTGAAGAACATACAACCCAAAGTTGAAG
AGAAAATCAGTTTCTCAGATGACTTTTCTAAAAATGGGTCTGCTACATCAAAGGTGCTCTTATTGCCTCC
AGATGTTTCTGCTTTGGCCACTCAAGCAGAGATAGAGAGCATAGTTAAACCCAAAGTTCTTGTGAAAGAA
GCTGAGAAAAAACTTCCTTCCGATACAGAAAAAGAGGACAGATCACCATCTGCTATATTTTCAGCAGAGC
TGAGTAAAACTTCAGTTGTTGACCTCCTGTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGC
CAGCCTATTCCTGCTGCTTTCATTGACAGTATTCAGCATTGTGAGCGTAACAGCCTACATTGCCTTGGCC
CTGCTCTCTGTGACCATCAGCTTTAGGATATACAAGGGTGTGATCCAAGCTATCCAGAAATCAGATGAAG
GCCACCCATTCAGGGCATATCTGGAATCTGAAGTTGCTATATCTGAGGAGTTGGTTCAGAAGTACAGTAA
TTCTGCTCTTGGTCATGTGAACTGCACGATAAAGGAACTCAGGCGCCTCTTCTTAGTTGATGATTTAGTT
GATTCTCTGAAGTTTGCAGTGTTGATGTGGGTATTTACCTATGTTGGTGCCTTGTTTAATGGTCTGACAC
TACTGATTTTGGCTCTCATTTCACTCTTCAGTGTTCCTGTTATTTATGAACGGCATCAGGCACAGATAGA
TCATTATCTAGGACTTGCAAATAAGAATGTTAAAGATGCTATGGCTAAAATCCAAGCAAAAATCCCTGGA
TTGAAGCGCAAAGCTGAATGA

Translation (986 aa):
MDLKEQPGNTISAGQEDFPSVLLETAASLPSLSPLSAASFKEHEYLGNLSTVLPTEGTLQENVSEASKEV
SEKAKTLLIDRDLTEFSELEYSEMGSSFSVSPKAESAVIVANPREEIIVKNKDEEEKLVSNNILHNQQEL
PTALTKLVKEDEVVSSEKAKDSFNEKRVAVEAPMREEYADFKPFERVWEVKDSKEDSDMLAAGGKIESNL
ESKVDKKCFADSLEQTNHEKDSESSNDDTSFPSTPEGIKDRSGAYITCAPFNPAATESIATNIFPLLGDP
TSENKTDEKKIEEKKAQIVTEKNTSTKTSNPFLVAAQDSETDYVTTDNLTKVTEEVVANMPEGLTPDLVQ
EACESELNEVTGTKIAYETKMDLVQTSEVMQESLYPAAQLCPSFEESEATPSPVLPDIVMEAPLNSAVPS
AGASVIQPSSSPLEASSVNYESIKHEPENPPPYEEAMSVSLKKVSGIKEEIKEPENINAALQETEAPYIS
IACDLIKETKLSAEPAPDFSDYSEMAKVEQPVPDHSELVEDSSPDSEPVDLFSDDSIPDVPQKQDETVML
VKESLTETSFESMIEYENKEKLSALPPEGGKPYLESFKLSLDNTKDTLLPDEVSTLSKKEKIPLQMEELS
TAVYSNDDLFISKEAQIRETETFSDSSPIEIIDEFPTLISSKTDSFSKLAREYTDLEVSHKSEIANAPDG
AGSLPCTELPHDLSLKNIQPKVEEKISFSDDFSKNGSATSKVLLLPPDVSALATQAEIESIVKPKVLVKE
AEKKLPSDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALA
LLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLV
DSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKIPG
LKRKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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