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Report for CCDS20383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20383.1 Public Mus musculus 6 Eogt 23 108 98 CCDS HistoryNCBI Gene:101351Re-query CCDS DB by CCDS ID:20383.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054344.10 ENSMUSP00000061610.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054344.10Link to Ensembl Protein Viewer:ENSMUSP00000061610.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054344Re-query CCDS DB by Protein ID:ENSMUSP00000061610
Original member Current member NCBI NM_175313.5 NP_780522.1 Accepted alive Link to Nucleotide Sequence:NM_175313.5Link to Protein Sequence:NP_780522.1Re-query CCDS DB by Nucleotide ID:NM_175313Re-query CCDS DB by Protein ID:NP_780522Link to BLAST:NP_780522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780522.1 527 Q8BYW9 527 100% 0 0

Chromosomal Locations for CCDS 20383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97112060 97112206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97112681 97112783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97113843 97113962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97116001 97116062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97118881 97118949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97119963 97120049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97120144 97120215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97120712 97120804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97125520 97125623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97131352 97131458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97134279 97134383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97135176 97135270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97142826 97142934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97143940 97144040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97145261 97145470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGTTAATGCTGCTTGTCTTTGGAGTATTGCTTCATGAAGTCCCACTGAGTGGCCAGGACAAGGCTCATT
CTGAGGCTGACGATGCGCCTGGCAAGGCCCTGTATGACTACTCCAGCCTCCGCCTCCCTGCGGAGCACAT
TCCCTTCTTCTTGCACAATAACAGGCATGTTGCCTCTGTGTGCAGGGAGGATTCCCACTGTCCATATAAG
AAACACTTAGAAAATCTAAACTACTGCTGGGGTTATGAGAAGTCCTGCGCACCAGAGTTTAGATTCGGTT
CCCCCGTTTGCAGCTATGTCGACTTGGGATGGACCGATACTCTGGAGTCAGCCCAGGACATGTTCTGGAG
GCAAGCTGACTTTGGATATGCGCGAGAGCGACTGGGAGAGATAAGAACGATCTGCCAGCCAGAGAGAGCA
AGCGACTCAAGTCTGGTTTGCTCCCGTTACCTTCAGTATTGTAGAGCTACTGGTCTATACCTGGACTTAA
GAAACATCAAGAGAAACCACGACAGATTCAAGGAAGATTTTCTTCAGGGTGGTGAAATTGGTGGATACTG
TAAACTTGACAGTCATGCACTGGTGTCTGAAGGGCAGCGTAAAAGTCCCCTGCAGTCTTGGTTTGCTGAG
CTACAAGGCTACACGCAGCTCAATTTCAGGCCTATAGAAGATGCTAAATGTGACATCGTTGTTGAAAAAC
CAACGTATTTCATGAAATTAGATGCAGGTATTAATATGTACCACCACTTCTGTGACTTCCTGAATCTCTA
CCTCACTCAGCACGTTAACAATTCTTTCAGCACGGACGTGTACATCGTGATGTGGGACACCAGCACTTAC
GGGTATGGTGACCTCTTCTCCGATACCTGGAAAGCATTTACTGACTATGACGTCATACATTTGAAAACCT
ATGATTCCAAAAAGGTGTGTTTTAAAGAAGCCGTGTTTTCGTTGCTGCCCCGCATGCGGTACGGGCTGTT
CTATAACACGCCTCTGATCTCTGGCTGTCAGAATACAGGATTATTCAGAGCCTTCTCCCAGCATGTGCTG
CATAGGCTGAACATCACTCAAGAGGGACCCAAGGATGGCAAAGTTCGAGTTACCATTCTTGCACGCAGCA
CAGAATACCGGAAAATCCTGAACCAAGACGAGCTGGTAAATGCACTGAAAACAGTATCCACATTTGAAGT
CCGGGTGGTTGATTACAAGTACAGAGAACTCGGGTTTTTAGATCAGCTCAGGATCACGCACAACACGGAC
ATATTTATTGGCATGCATGGAGCTGGCCTTACCCACTTACTTTTCCTTCCGGACTGGGCTGCTGTGTTCG
AGCTGTACAACTGTGAAGATGAGCGCTGCTACTTAGACCTGGCCAGGCTCAGAGGCATCCACTACATCAC
CTGGCGGAAGCCCAGCAAAGTATTTCCTCAGGATAAGGGTCACCATCCAACTCTGGGAGAACACCCGAAG
TTTACCAACTACTCTTTTGATGTAGAAGAATTCATGTACCTTGTCCTTCAGGCTGCAGAGCATGTACTGC
AGCACCCACAGTGGCCATTTAAGAAGAAACATGATGAGCTATAG

Translation (527 aa):
MLMLLVFGVLLHEVPLSGQDKAHSEADDAPGKALYDYSSLRLPAEHIPFFLHNNRHVASVCREDSHCPYK
KHLENLNYCWGYEKSCAPEFRFGSPVCSYVDLGWTDTLESAQDMFWRQADFGYARERLGEIRTICQPERA
SDSSLVCSRYLQYCRATGLYLDLRNIKRNHDRFKEDFLQGGEIGGYCKLDSHALVSEGQRKSPLQSWFAE
LQGYTQLNFRPIEDAKCDIVVEKPTYFMKLDAGINMYHHFCDFLNLYLTQHVNNSFSTDVYIVMWDTSTY
GYGDLFSDTWKAFTDYDVIHLKTYDSKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVL
HRLNITQEGPKDGKVRVTILARSTEYRKILNQDELVNALKTVSTFEVRVVDYKYRELGFLDQLRITHNTD
IFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGIHYITWRKPSKVFPQDKGHHPTLGEHPK
FTNYSFDVEEFMYLVLQAAEHVLQHPQWPFKKKHDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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