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Report for CCDS21050.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21050.2 Reviewed, update pending Mus musculus 7 Acp7 23 108 98 CCDS HistoryNCBI Gene:101744Re-query CCDS DB by CCDS ID:21050.2See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 21050.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159560.2 ENSMUSP00000147133.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159560.2Link to Ensembl Protein Viewer:ENSMUSP00000147133.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000159560Re-query CCDS DB by Protein ID:ENSMUSP00000147133
Original member Current member NCBI NM_175319.5 NP_780528.2 Pending alive Link to Nucleotide Sequence:NM_175319.5Link to Protein Sequence:NP_780528.2Re-query CCDS DB by Nucleotide ID:NM_175319Re-query CCDS DB by Protein ID:NP_780528Link to BLAST:NP_780528.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780528.2 438 Q8BX37 438 100% 0 0

Chromosomal Locations for CCDS 21050.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28607940 28608005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28610986 28611123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28614219 28614290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28614393 28614460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28614536 28614593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28614680 28614787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28614861 28614975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28615073 28615135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28615364 28615487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28616481 28616663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28617053 28617253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28629459 28629579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAGCCCCTTTCTTGGAGGCTGGCTCTTCTTCTGCATGCTCCTGCCTTTCTCCCCGGGAGTCCAGGGAG
CCCAAGAGTATCCTCATGTTACACCAGAGCAAATCCATCTGTCCTACCTGGGGGAGCCAGGCACCATGAC
TGTGACCTGGACCACATGGGCTCCAGCCCGGTCTGAGGTGCAGTTCGGCTCGCAGCTGTCTGGTCCTCTC
CCATTCCGTGCCCACGGCACCGCCAGGGCCTTCGTGGATGGAGGAGTTCTGCGGCGCAAACTCTACATTC
ACCGCGTGACGCTGCGGAAGCTGCAGCCGGGGGCTCAGTATGTTTACCGTTGTGGCAGCTCTCAGGGCTG
GAGCCGGAGGTTTCGCTTCACAGCCTTGAAGAATGGGGTCCATTGGAGCCCCCGCCTGGCTGTGTTTGGT
GACATGGGGGCTGACAACCCGAAGGCCCTGCCCAGGCTACGGAGGGACACCCAGCAGGGCATGTTTGATG
CAGTGCTGCACGTGGGAGACTTTGCCTACAACATGGACCAGGACAATGCTCGCGTTGGGGACAGATTTAT
GAGGCTCATTGAACCTGTTGCTGCCAGCCTGCCATACATGACATGCCCTGGGAATCATGAACAGCGCTAC
AATTTCTCTAACTACAAGGCTCGCTTCAGCATGCCAGGGGACAATGAAGGCTTGTGGTACAGCTGGGACC
TGGGGCCTGCCCATATCATCTCATTCTCCACTGAGGTATACTTCTTTCTGCACTATGGCCGTCACCTGAT
TGAGAAGCAGTTCCGTTGGCTGGAGAATGACCTCCAGAAAGCCAATAAGAACCGGGTGGCCCGACCTTGG
ATCATCACGATGGGTCATCGGCCTATGTACTGTTCCAATGCGGACCTGGACGACTGCACGAGGCACGAAA
GCAGGGTCCGCAAAGGCCTCCACGGCAAGTTGTTCGGGCTAGAAGACCTTTTCCATAAATACGGCGTGGA
TCTGGAGTTCTGGGCTCATGAACACTCCTACGAGCGACTATGGCCAATTTACAACTACCAGGTATTTAAT
GGAAGCCTGGAAAGCCCCTACACCAACCCTCGAGGCCCAGTTCACATCATTACAGGATCTGCGGGTTGTG
AAGAGCTGCTGACTCCCTTTGTCAGGAAACCCAGACCGTGGAGCGCCGTGCGCGTGAAGGAGTACGGCTA
CACTCGGATGCACATCCTTAATGGCACCCATATGCACATCCAGCAGGTGTCGGATGACCAGGATGGGAAG
ATTGTGGACGACGTCTGGGTGGTTAGACCTTTGCTTGGCCGGATGATGTACCACTAA

Translation (438 aa):
MSPFLGGWLFFCMLLPFSPGVQGAQEYPHVTPEQIHLSYLGEPGTMTVTWTTWAPARSEVQFGSQLSGPL
PFRAHGTARAFVDGGVLRRKLYIHRVTLRKLQPGAQYVYRCGSSQGWSRRFRFTALKNGVHWSPRLAVFG
DMGADNPKALPRLRRDTQQGMFDAVLHVGDFAYNMDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEQRY
NFSNYKARFSMPGDNEGLWYSWDLGPAHIISFSTEVYFFLHYGRHLIEKQFRWLENDLQKANKNRVARPW
IITMGHRPMYCSNADLDDCTRHESRVRKGLHGKLFGLEDLFHKYGVDLEFWAHEHSYERLWPIYNYQVFN
GSLESPYTNPRGPVHIITGSAGCEELLTPFVRKPRPWSAVRVKEYGYTRMHILNGTHMHIQQVSDDQDGK
IVDDVWVVRPLLGRMMYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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