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Report for CCDS22560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22560.1 Public Mus musculus 8 Usb1 23 108 98 CCDS HistoryNCBI Gene:101985Re-query CCDS DB by CCDS ID:22560.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034245.15 ENSMUSP00000034245.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034245.15Link to Ensembl Protein Viewer:ENSMUSP00000034245.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034245Re-query CCDS DB by Protein ID:ENSMUSP00000034245
Original member NCBI NM_133954.2 NP_598715.2 Updated not alive Link to Nucleotide Sequence:NM_133954.2Link to Protein Sequence:NP_598715.2Re-query CCDS DB by Nucleotide ID:NM_133954Re-query CCDS DB by Protein ID:NP_598715
Current member NCBI NM_133954.3 NP_598715.2 Accepted alive Link to Nucleotide Sequence:NM_133954.3Link to Protein Sequence:NP_598715.2Re-query CCDS DB by Nucleotide ID:NM_133954Re-query CCDS DB by Protein ID:NP_598715Link to BLAST:NP_598715.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598715.2 267 Q91W78 267 99.6255% 0 1

Chromosomal Locations for CCDS 22560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95332362 95332465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95333368 95333534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95338634 95338817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95343122 95343175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95343957 95344062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95345289 95345372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95346527 95346631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGAGCTCGGCGCCCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGGATGAAGCGGAGGCTGTCGCCGCGG
GGCGGAGCAAACCGGGTACTGGCTTCCACCGTTGTGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCCAGT
GCCTGACAGTGTGCTAAGTATGTTCCCCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGC
GGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTATGAGGCGA
AGGAGGACTTCCGGGATCTGCTTGACGCGTTGCTGCCCCGAGCTCAGATGTTTGTACCGAGACTGGTACT
GATGGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCGTCACCACTGGATCCTCCCCTTTGTG
CAGGTGCTCAAGGACCGCATGGCCTCTTTCCAAAGGTTCTTCTTTACTGCCAACAGGGTAAAGATTTACA
CCAATCAAGAGAAAACCAGGACCTTCATCGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGACCT
GGTTTCAGAGGTGGACAGAGCCATGAAGGAATTTGACCTTACTACTTTCTACCAGGACCCCTCATTTCAT
GTCAGCCTGGCCTGGTGTGTAGGTGATGCTAGTCTCCAGCTGGAGGGACAGTGCCTGCAGGAACTACAGG
AAATCGTGGATGAGTTTGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTCCGCTGCAAGTC
CGGGAACAAATTCTTCTCCATGCCTTTGAAGTGA

Translation (267 aa):
MSSAPLVGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLPVPDSVLSMFPSTEEGPEDDSAKHG
GRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHVSLSQSVVLRHHWILPFV
QVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFH
VSLAWCVGDASLQLEGQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSMPLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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