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Report for CCDS54749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54749.1 Public Homo sapiens 4 LCORL 24 110 108 CCDS HistoryNCBI Gene:254251Re-query CCDS DB by CCDS ID:54749.1Re-query CCDS DB by GeneID:254251See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382226.5 ENSP00000371661.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382226.5Link to Ensembl Protein Viewer:ENSP00000371661.5Re-query CCDS DB by Nucleotide ID:ENST00000382226Re-query CCDS DB by Protein ID:ENSP00000371661
Original member Current member NCBI NM_001166139.2 NP_001159611.1 Accepted alive Link to Nucleotide Sequence:NM_001166139.2Link to Protein Sequence:NP_001159611.1Re-query CCDS DB by Nucleotide ID:NM_001166139Re-query CCDS DB by Protein ID:NP_001159611Link to BLAST:NP_001159611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159611.1 602 Q8N3X6-1 602 100% 0 0

Chromosomal Locations for CCDS 54749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17883720 17884752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17886068 17886161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17909094 17909345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17961903 17962032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17962970 17963049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17972820 17972885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 18021598 18021751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGACAAGGGAAGAGAGAGAATGGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCGCTCAGT
GCCGGAGCCCTCGGTGCGCGGCGGAGAGAAGAGGATTCCGGCGGGAACTCGACTCTTGGCGCCACCGCCT
CATGCACTGTGTAGGTTTTGAGAGTATTTTAGAAGGGCTTTATGGACCACGGCTACGAAGAGACCTCAGT
TTATTTGAAGACTGTGAACCAGAAGAGCTGACTGACTGGTCTATGGATGAAAAATGTTCATTTTGTAACC
TACAGAGAGAAGCAGTCAGTGATTGTATACCATCTCTTGATTCTTCACAGTCAACACCAACAGAGGAGCT
ATCATCTCAGGGCCAGTCCAACACTGATAAGATTGAATGCCAAGCAGAAAATTACCTAAATGCACTCTTT
CGAAAGAAAGATCTTCCTCAGAACTGTGATCCTAACATTCCCCTAGTTGCTCAGGAATTAATGAAAAAGA
TGATACGTCAATTTGCGATTGAGTACATTTCAAAAAGTGGTAAAACTCAAGAGAATAGAAATGGTTCAAT
TGGACCAAGTATAGTATGTAAAAGTATCCAAATGAATCAAGCAGAAAACTCCCTTCAGGAAGAGCAGGAA
GGCCCCTTAGACCTCACTGTGAATCGAATGCAAGAACAAAATACTCAGCAAGGGGATGGAGTGTTAGATC
TCTCTACAAAGAAAACCAGCATAAAATCTGAAGAGTCATCCATATGTGATCCTTCTTCTGAAAATTCAGT
GGCTGGGAGACTACACAGAAACAGAGAGGACTATGTGGAAAGAAGTGCTGAGTTTGCAGATGGTTTGCTC
TCAAAAGCTTTGAAAGACATTCAGTCTGGAGCACTGGACATAAATAAAGCAGGCATACTTTATGGCATAC
CTCAAAAAACTTTACTTCTTCACTTAGAAGCCTTACCAGCAGGGAAGCCTGCATCTTTTAAAAACAAAAC
TCGAGATTTCCATGATAGTTATTCATATAAGGACAGTAAAGAAACTTGTGCAGTGCTGCAAAAAGTAGCC
TTGTGGGCAAGAGCTCAAGCAGAGCGCACAGAAAAAAGTAAACTCAATCTACTTGAAACCTCAGAAATAA
AATTCCCAACAGCTTCCACTTACCTCCATCAGCTAACTCTACAGAAAATGGTCACTCAGTTTAAAGAAAA
AAATGAAAGCCTCCAATATGAAACTTCAAATCCTACTGTACAGTTAAAAATTCCTCAGCTACGAGTAAGT
TCTGTCTCAAAATCACAACCTGATGGTTCTGGTCTGTTGGATGTTATGTATCAAGTTTCCAAAACCTCTT
CAGTCCTAGAAGGATCAGCTCTCCAAAAACTGAAAAATATACTCCCTAAACAGAACAAAATAGAATGTTC
TGGGCCTGTAACTCACTCAAGTGTTGACTCTTACTTTCTACATGGGGACCTCTCTCCTTTGTGTCTTAAT
TCTAAAAATGGAACAGTTGATGGAACCTCTGAAAATACTGAAGATGGATTAGATCGAAAAGACAGTAAGC
AGCCCAGGAAAAAACGTGGCCGCTATCGGCAATATGATCATGAAATAATGGAAGAAGCTATTGCAATGGT
AATGAGCGGAAAAATGAGTGTTTCCAAAGCACAAGGAATTTATGGGGTACCTCACAGCACTTTAGAATAC
AAGGTAAAAGAAAGATCTGGAACACTGAAGACTCCTCCGAAGAAGAAACTACGATTACCAGACACTGGGT
TATATAATATGACAGATTCAGGGACTGGCAGCTGCAAAAACAGCAGCAAGCCTGTGTAG

Translation (602 aa):
MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGLYGPRLRRDLS
LFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALF
RKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQE
GPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGRLHRNREDYVERSAEFADGLL
SKALKDIQSGALDINKAGILYGIPQKTLLLHLEALPAGKPASFKNKTRDFHDSYSYKDSKETCAVLQKVA
LWARAQAERTEKSKLNLLETSEIKFPTASTYLHQLTLQKMVTQFKEKNESLQYETSNPTVQLKIPQLRVS
SVSKSQPDGSGLLDVMYQVSKTSSVLEGSALQKLKNILPKQNKIECSGPVTHSSVDSYFLHGDLSPLCLN
SKNGTVDGTSENTEDGLDRKDSKQPRKKRGRYRQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEY
KVKERSGTLKTPPKKKLRLPDTGLYNMTDSGTGSCKNSSKPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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