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Report for CCDS5153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5153.1 Public Homo sapiens 6 STX7 24 110 108 CCDS HistoryNCBI Gene:8417Re-query CCDS DB by CCDS ID:5153.1Re-query CCDS DB by GeneID:8417See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367941.7 ENSP00000356918.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367941.7Link to Ensembl Protein Viewer:ENSP00000356918.1Re-query CCDS DB by Nucleotide ID:ENST00000367941Re-query CCDS DB by Protein ID:ENSP00000356918
Original member Current member NCBI NM_001326578.2 NP_001313507.1 Accepted alive Link to Nucleotide Sequence:NM_001326578.2Link to Protein Sequence:NP_001313507.1Re-query CCDS DB by Nucleotide ID:NM_001326578Re-query CCDS DB by Protein ID:NP_001313507Link to BLAST:NP_001313507.1
Original member Current member NCBI NM_001326579.2 NP_001313508.1 Accepted alive Link to Nucleotide Sequence:NM_001326579.2Link to Protein Sequence:NP_001313508.1Re-query CCDS DB by Nucleotide ID:NM_001326579Re-query CCDS DB by Protein ID:NP_001313508Link to BLAST:NP_001313508.1
Original member Current member NCBI NM_003569.3 NP_003560.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003569.3Link to Protein Sequence:NP_003560.2Re-query CCDS DB by Nucleotide ID:NM_003569Re-query CCDS DB by Protein ID:NP_003560Link to BLAST:NP_003560.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313507.1 261 O15400-1 261 100% 0 0
NP_001313508.1 261 O15400-1 261 100% 0 0
NP_003560.2 261 O15400-1 261 100% 0 0

Chromosomal Locations for CCDS 5153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132460758 132460850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132463993 132464075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132468403 132468475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132469951 132470047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132470574 132470626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132471463 132471600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132472282 132472375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132475593 132475662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132503446 132503530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGTCTTACACTCCAGGAGTTGGTGGTGACCCCGCCCAGTTGGCCCAGAGGATCTCTTCTAACATCCAGA
AGATCACACAGTGTTCTGTGGAAATACAAAGAACTCTGAATCAACTTGGAACACCTCAAGATTCACCTGA
ATTGAGGCAACAGTTGCAACAGAAGCAGCAGTATACTAACCAGCTTGCCAAAGAAACAGATAAGTACATT
AAAGAGTTTGGATCTCTGCCCACCACCCCCAGTGAACAGCGTCAAAGGAAAATACAGAAGGATCGCTTAG
TGGCAGAGTTCACAACATCACTGACAAACTTCCAGAAGGTCCAGAGGCAGGCTGCTGAGCGAGAGAAAGA
GTTTGTTGCTCGAGTAAGAGCCAGTTCCAGAGTGTCTGGCAGTTTTCCTGAGGACAGCTCAAAAGAAAGG
AATCTTGTATCCTGGGAAAGCCAAACTCAACCTCAAGTGCAGGTGCAGGATGAAGAAATTACAGAGGATG
ACCTCCGTCTTATTCATGAGAGAGAATCTTCTATCAGGCAACTTGAAGCTGATATTATGGATATTAATGA
AATATTTAAAGATTTGGGAATGATGATTCATGAACAAGGAGATGTAATAGATAGCATAGAAGCCAATGTG
GAAAATGCAGAGGTGCACGTTCAGCAAGCAAATCAGCAGCTGTCAAGGGCAGCAGATTATCAGCGCAAAT
CCAGAAAAACCCTGTGCATCATCATTCTTATCCTTGTCATTGGAGTTGCGATTATCAGTCTCATCATATG
GGGATTGAACCACTGA

Translation (261 aa):
MSYTPGVGGDPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYI
KEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPEDSSKER
NLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANV
ENAEVHVQQANQQLSRAADYQRKSRKTLCIIILILVIGVAIISLIIWGLNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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