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Report for CCDS23789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23789.1 Public Mus musculus 10 Traf3ip2 23 108 98 CCDS HistoryNCBI Gene:103213Re-query CCDS DB by CCDS ID:23789.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019987.6 ENSMUSP00000019987.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019987.6Link to Ensembl Protein Viewer:ENSMUSP00000019987.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019987Re-query CCDS DB by Protein ID:ENSMUSP00000019987
Original member Current member NCBI NM_134000.3 NP_598761.2 Accepted alive Link to Nucleotide Sequence:NM_134000.3Link to Protein Sequence:NP_598761.2Re-query CCDS DB by Nucleotide ID:NM_134000Re-query CCDS DB by Protein ID:NP_598761Link to BLAST:NP_598761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598761.2 555 Q8N7N6 555 100% 0 0

Chromosomal Locations for CCDS 23789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 39625858 39626659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39634535 39634724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39639220 39639398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39641306 39641394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39645708 39645776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39646849 39646965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39650906 39650980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39654383 39654529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGAACCGAAGCATTCCCGTGGAGGTTGATGAATCAGAACCATTCCCGAGTCAATTGCTGAAACCGATCC
CAGAATACTCTCCAGAAGAGGAATTGGAACCACCTGCCCCCAATACAAGGAACATGGCACCCAGCAGCTT
GTCTGTGCTCCAGTGCCCTCCCCTGAAACTGGCAAACCACCAGCCTGTGTCACAACAGGTCACCTGCCTG
CGAGCTAAAGTCCTGGAGGAAGGTGAAGCCAGTTTCTTTAGAAGGCACCCTGAACTTGGCAAAGATATTT
CCTCATGTTCCTCTGGAGCCAGCGAGCCTGAGTCTGAGCTCGGAGCCCTCCCTCCAGAGCATCGGTTCAC
ACTTACGGAAAAACGCAATAGATGGCTGGGATCTCAGCTTTCAGCAGCTTCTCCTGACACTGGCCATGAA
TCAGACAAATCAGACCCAAGTTTACCTAATGCTTTGGCAGACTCCTTCAGTGGTGGCCAAGAGATGATGC
CCCGGCCCCGGCCCCGGCCTGGGCCCCACAGGCACAGGGCAGCCCCAGATGTGCCCACGATAGACACTGG
CTATGATTCCCAGCCCCAAGATGTCCTGGGCATCAGGCAGTTGGAGAGGCCATTGCCCCTCACCTCCTCG
TGTTACCTGCAGGACCTCCCTGGGCCTCTGAGGTCCAGGGAATTGCCACCTCAGTTTGAACTTGAGAGGT
ATCCAATGAACGCCCAGCTGCTGCCGCCCCATCCTTCCCCACAGGCCCCATGGAACTGTCAGTACTACTG
CCCCGGAGGGCCCTACCACCACCAGGTGCCACACGGCCATGGCTACCCTCCAGCAGCAGCCTACCAGCAA
GTACTCCAGCCTGCTCTGCCTGGGCAGGTCCTTCCTGGGGCAAGGGCAAGAGGCCCACGCCCTGTGCAGA
AGGTCATCCTGAATGACTCCAGCCCCCAAGACCAAGAAGAGAGACCTGCACAGAGAGACTTCTCTTTCCC
GAGGCTCCCGAGGGACCAGCTCTACCGCCCACCATCTAATGGAGTGGAAGCCCCTGAGGAGTCCTTGGAC
CTTCCTGCAGAGCTGAGACCACATGGTCCCCAGGCTCCATCCCTAGCTGCCGTGCCTAGACCCCCTAGCA
ACCCCTTAGCCCGAGGAACTCTAAGAACCAGCAATTTGCCAGAAGAATTACGGAAAGTCTTTATCACTTA
TTCTATGGACACAGCCATGGAGGTGGTGAAATTTGTGAACTTTCTGTTGGTGAACGGCTTCCAAACTGCG
ATTGACATATTTGAGGATAGAATCCGGGGTATTGATATCATTAAATGGATGGAGCGCTATCTTCGAGATA
AGACAGTGATGATAATCGTAGCAATCAGCCCCAAATACAAACAGGATGTGGAAGGCGCTGAGTCGCAGCT
GGACGAGGACGAGCATGGCTTACATACTAAGTACATTCATCGGATGATGCAGATTGAGTTCATAAGTCAG
GGAAGCATGAACTTCAGATTCATCCCTGTGCTCTTCCCAAATGCCAAGAAGGAGCATGTGCCGACCTGGC
TTCAGAACACTCATGTTTACAGCTGGCCCAAGAATAAGAAAAACATCCTGCTGCGGCTGCTCAGGGAGGA
AGAGTATGTGGCTCCTCCCCGAGGCCCTCTGCCCACCCTTCAGGTGGTACCCTTGTGA

Translation (555 aa):
MNRSIPVEVDESEPFPSQLLKPIPEYSPEEELEPPAPNTRNMAPSSLSVLQCPPLKLANHQPVSQQVTCL
RAKVLEEGEASFFRRHPELGKDISSCSSGASEPESELGALPPEHRFTLTEKRNRWLGSQLSAASPDTGHE
SDKSDPSLPNALADSFSGGQEMMPRPRPRPGPHRHRAAPDVPTIDTGYDSQPQDVLGIRQLERPLPLTSS
CYLQDLPGPLRSRELPPQFELERYPMNAQLLPPHPSPQAPWNCQYYCPGGPYHHQVPHGHGYPPAAAYQQ
VLQPALPGQVLPGARARGPRPVQKVILNDSSPQDQEERPAQRDFSFPRLPRDQLYRPPSNGVEAPEESLD
LPAELRPHGPQAPSLAAVPRPPSNPLARGTLRTSNLPEELRKVFITYSMDTAMEVVKFVNFLLVNGFQTA
IDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDEDEHGLHTKYIHRMMQIEFISQ
GSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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