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Report for CCDS10295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10295.1 Public Homo sapiens 15 HMG20A 24 110 108 CCDS HistoryNCBI Gene:10363Re-query CCDS DB by CCDS ID:10295.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336216.9 ENSP00000336856.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336216.9Link to Ensembl Protein Viewer:ENSP00000336856.4Re-query CCDS DB by Nucleotide ID:ENST00000336216Re-query CCDS DB by Protein ID:ENSP00000336856
Original member Current member EBI ENST00000381714.7 ENSP00000371133.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381714.7Link to Ensembl Protein Viewer:ENSP00000371133.3Re-query CCDS DB by Nucleotide ID:ENST00000381714Re-query CCDS DB by Protein ID:ENSP00000371133
Original member Current member NCBI NM_001304504.2 NP_001291433.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304504.2Link to Protein Sequence:NP_001291433.1Re-query CCDS DB by Nucleotide ID:NM_001304504Re-query CCDS DB by Protein ID:NP_001291433Link to BLAST:NP_001291433.1
Original member Current member NCBI NM_018200.4 NP_060670.1 Accepted alive Link to Nucleotide Sequence:NM_018200.4Link to Protein Sequence:NP_060670.1Re-query CCDS DB by Nucleotide ID:NM_018200Re-query CCDS DB by Protein ID:NP_060670Link to BLAST:NP_060670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291433.1 347 Q9NP66-1 347 100% 0 0
NP_060670.1 347 Q9NP66-1 347 100% 0 0

Chromosomal Locations for CCDS 10295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77458408 77458496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77464240 77464387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77467095 77467307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77470910 77471042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77471783 77471814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77477555 77477630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77478295 77478510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77479179 77479315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGAAAACTTGATGACTAGCTCCACCCTACCGCCCCTTTTTGCAGATGAAGACGGTTCCAAGGAGAGTA
ATGATCTGGCTACCACTGGGTTAAATCACCCAGAGGTTCCATACAGTAGTGGCGCCACATCATCCACCAA
CAATCCAGAATTTGTGGAGGATCTCTCTCAAGGTCAGTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAA
GGCAATGAACAGAGGCATGAAGATGAGCAACGAAGTAAACGAGGAGGTTGGTCCAAAGGAAGAAAGAGGA
AGAAACCTCTTCGAGACAGCAATGCACCCAAATCCCCCCTTACAGGATATGTTCGGTTCATGAATGAGCG
TCGAGAACAACTTCGAGCAAAGAGACCAGAAGTCCCATTTCCAGAAATCACAAGGATGTTAGGCAATGAA
TGGAGTAAACTGCCTCCTGAGGAAAAACAGCGCTACCTTGATGAAGCAGACAGAGATAAGGAGCGTTACA
TGAAGGAACTGGAACAGTATCAGAAAACAGAGGCCTACAAGGTCTTCAGTAGGAAAACCCAGGACCGTCA
GAAAGGCAAATCTCATAGGCAAGATGCAGCCCGGCAGGCCACTCATGATCATGAGAAAGAAACAGAGGTA
AAGGAACGGTCTGTTTTTGACATCCCTATATTTACAGAGGAATTCTTGAACCATAGCAAAGCTCGGGAAG
CAGAGCTCCGCCAGCTTCGCAAATCCAACATGGAGTTTGAGGAGAGGAATGCAGCCCTGCAAAAGCACGT
GGAGAGCATGCGCACAGCAGTGGAGAAGCTGGAGGTGGATGTGATCCAGGAGCGGAGCCGCAACACAGTC
TTACAGCAGCACCTGGAGACCCTGCGGCAGGTGCTGACCAGCAGCTTTGCCAGCATGCCCTTGCCTGGAA
GTGGAGAGACACCTACAGTGGACACCATTGACTCATATATGAACAGACTGCACAGTATTATTTTAGCTAA
TCCCCAAGACAATGAAAACTTCATAGCTACAGTTCGAGAAGTTGTGAACAGACTCGATCGTTAG

Translation (347 aa):
MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQLLQSESSNAAE
GNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNE
WSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEV
KERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV
LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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