NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1883.1 Public Homo sapiens 2 C1D 24 110 108 CCDS HistoryNCBI Gene:10438Re-query CCDS DB by CCDS ID:1883.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355848.7 ENSP00000348107.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355848.7Link to Ensembl Protein Viewer:ENSP00000348107.3Re-query CCDS DB by Nucleotide ID:ENST00000355848Re-query CCDS DB by Protein ID:ENSP00000348107
Original member Current member EBI ENST00000410067.8 ENSP00000386468.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000410067.8Link to Ensembl Protein Viewer:ENSP00000386468.3Re-query CCDS DB by Nucleotide ID:ENST00000410067Re-query CCDS DB by Protein ID:ENSP00000386468
Original member Current member EBI ENST00000409302.1 ENSP00000386779.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409302.1Link to Ensembl Protein Viewer:ENSP00000386779.1Re-query CCDS DB by Nucleotide ID:ENST00000409302Re-query CCDS DB by Protein ID:ENSP00000386779
Original member Current member NCBI NM_001190263.2 NP_001177192.1 Accepted alive Link to Nucleotide Sequence:NM_001190263.2Link to Protein Sequence:NP_001177192.1Re-query CCDS DB by Nucleotide ID:NM_001190263Re-query CCDS DB by Protein ID:NP_001177192Link to BLAST:NP_001177192.1
Original member Current member NCBI NM_001190265.2 NP_001177194.1 Accepted alive Link to Nucleotide Sequence:NM_001190265.2Link to Protein Sequence:NP_001177194.1Re-query CCDS DB by Nucleotide ID:NM_001190265Re-query CCDS DB by Protein ID:NP_001177194Link to BLAST:NP_001177194.1
Original member Current member NCBI NM_006333.4 NP_006324.1 Accepted alive Link to Nucleotide Sequence:NM_006333.4Link to Protein Sequence:NP_006324.1Re-query CCDS DB by Nucleotide ID:NM_006333Re-query CCDS DB by Protein ID:NP_006324Link to BLAST:NP_006324.1
Original member Current member NCBI NM_173177.3 NP_775269.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173177.3Link to Protein Sequence:NP_775269.1Re-query CCDS DB by Nucleotide ID:NM_173177Re-query CCDS DB by Protein ID:NP_775269Link to BLAST:NP_775269.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177192.1 141 Q13901 141 100% 0 0
NP_001177194.1 141 Q13901 141 100% 0 0
NP_006324.1 141 Q13901 141 100% 0 0
NP_775269.1 141 Q13901 141 100% 0 0

Chromosomal Locations for CCDS 1883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68042889 68043053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68045988 68046043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68046344 68046410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68047173 68047310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGCAGGTGAAGAAATTAATGAAGACTATCCAGTAGAAATTCACGAGTATTTGTCAGCGTTTGAGAATT
CCATTGGTGCTGTGGATGAGATGCTGAAGACCATGATGTCTGTTTCTAGAAATGAGTTGTTGCAGAAGTT
GGATCCACTTGAACAAGCAAAAGTGGATTTGGTTTCTGCATACACATTAAATTCAATGTTTTGGGTTTAT
TTGGCAACCCAAGGAGTTAATCCTAAGGAACATCCAGTAAAACAGGAATTGGAAAGAATCAGAGTATATA
TGAACAGAGTCAAGGAAATAACAGACAAGAAAAAGGCTGGCAAGCTGGACAGAGGTGCAGCTTCAAGATT
TGTAAAAAATGCCCTCTGGGAACCAAAATCGAAAAATGCATCAAAAGTTGCCAATAAAGGAAAAAGTAAA
AGTTAA

Translation (141 aa):
MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY
LATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKNASKVANKGKSK
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH