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Report for CCDS24401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24401.1 Public Mus musculus 11 Ccdc117 23 108 98 CCDS HistoryNCBI Gene:104479Re-query CCDS DB by CCDS ID:24401.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020776.4 ENSMUSP00000020776.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020776.4Link to Ensembl Protein Viewer:ENSMUSP00000020776.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020776Re-query CCDS DB by Protein ID:ENSMUSP00000020776
Original member Current member NCBI NM_134033.2 NP_598794.2 Accepted alive Link to Nucleotide Sequence:NM_134033.2Link to Protein Sequence:NP_598794.2Re-query CCDS DB by Nucleotide ID:NM_134033Re-query CCDS DB by Protein ID:NP_598794Link to BLAST:NP_598794.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598794.2 277 Q6PB51 277 100% 0 0

Chromosomal Locations for CCDS 24401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5531296 5531533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5534243 5534380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5534765 5534989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5541373 5541423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5541877 5542058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGCAGCCCTCGGCCGGCCCTTCAGCGGCCTCCCTCTGAGCGGCAGCGCGGACTTCCTGCAGCCGCCAC
CGGCCTTCGCGGGCCGGGCCTTCCCGCCAGGAGCCGCCGGCCATGACCTGGCCCCGCGGCCCGGTGTCCG
CGGCGCGCCGAGCAGCCCGGGCGGGAGAACAGCGCGCGGACGTGTTTCCATTCACTGTAGAAAGAAACAC
AAGCGGTTGGCGGAGGATGATGAGTGTCCAGTAAGAAAGAAACGACTGACTGAAGCTGAACTCGGTGCAG
TTACTGATGAATGGGCTCTCGGCGCACATCAGGGAAGAGAAGGTCATGGGGTAAACACGTGTCCTAGCAG
CCTTTCTATGCCCAGCATGCTAGATGTGGTCTGTGAGGAAATGGATCAGACAACTGGAGAACCACAGTGT
GAAGTCGCCCGAAGGCGGCTGCAAGAGATTGAGGACAGGATAATTGACGAAGATGAAGAGGTTGAAAGTG
ACAGAAATGTTAGCCACCTCCCAAGTCTTGTCCTTTCTGACACCATGAAAACGGGTTTGAAGAGGGAATT
TGATGAAGTCTTCACAAAGAGGATGATTGAGTCTATGAGCCGTCCTTCTATGGAGCTTGTGCTCTGGAAA
CCTCTCCCTGAACTCCTTCCTGAGAAGCCAAAGCCATCATCTAGCCCTAAGAACTACAGGAGAGAGAGCC
AAGCAAAGCACGCAGCTCCGGGCACTGCGTTCCCACAGAGGACTGAAGGGTTGCTGGAACCTCAGTGCGC
AGACGCGCCGCTTTACCGTAGTCTGGAGGCAGCTACTAGCACAGAGGAGGAGATGGAGCTCTAG

Translation (277 aa):
MAALGRPFSGLPLSGSADFLQPPPAFAGRAFPPGAAGHDLAPRPGVRGAPSSPGGRTARGRVSIHCRKKH
KRLAEDDECPVRKKRLTEAELGAVTDEWALGAHQGREGHGVNTCPSSLSMPSMLDVVCEEMDQTTGEPQC
EVARRRLQEIEDRIIDEDEEVESDRNVSHLPSLVLSDTMKTGLKREFDEVFTKRMIESMSRPSMELVLWK
PLPELLPEKPKPSSSPKNYRRESQAKHAAPGTAFPQRTEGLLEPQCADAPLYRSLEAATSTEEEMEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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