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Report for CCDS14424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14424.1 Public Homo sapiens X CDX4 24 110 108 CCDS HistoryNCBI Gene:1046Re-query CCDS DB by CCDS ID:14424.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373514.3 ENSP00000362613.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373514.3Link to Ensembl Protein Viewer:ENSP00000362613.1Re-query CCDS DB by Nucleotide ID:ENST00000373514Re-query CCDS DB by Protein ID:ENSP00000362613
Original member Current member NCBI NM_005193.2 NP_005184.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005193.2Link to Protein Sequence:NP_005184.1Re-query CCDS DB by Nucleotide ID:NM_005193Re-query CCDS DB by Protein ID:NP_005184Link to BLAST:NP_005184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005184.1 284 O14627 284 100% 0 0

Chromosomal Locations for CCDS 14424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73447254 73447755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73453517 73453662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73454379 73454585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTACGGAAGCTGTCTTTTGGAGAAAGAAGCAGGCATGTACCCGGGCACTCTCATGAGCCCTGGGGGCG
AC
GGCACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGC
A
CCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGA
GTC
TGGGGCTCACCCTACAGTCCCCCGCGAGAAGACTGGAGCGTGTATCCTGGGCCGTCTAGTACAATGG
GC
ACAGTGCCGGTGAACGACGTGACCTCTAGCCCCGCCGCTTTCTGCTCGACCGACTACAGCAACTTGGG
C
CCTGTGGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCCAGGCTGGCGGGTCGCTTGTCCCGACGGAC
GCA
GGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCAAGACGG
TG
CAGGTGACGGGGAAAACCAGGACAAAAGAAAAGTATCGTGTAGTTTACACTGATCATCAAAGATTGGA
G
CTGGAAAAGGAATTCCATTGCAATAGATATATCACCATCCAGAGAAAATCAGAGCTGGCAGTTAACCTG
GGC
CTTTCCGAGAGACAGGTGAAAATCTGGTTTCAGAATCGCAGAGCCAAGGAGAGAAAGATGATCAAAA
AG
AAAATCTCCCAGTTTGAGAATAGTGGAGGCTCGGTGCAAAGTGACTCTGACTCCATCAGCCCTGGGGA
A
CTACCTAACACTTTTTTCACCACACCATCTGCTGTTCGTGGATTTCAACCTATTGAGATACAGCAGGTT
ATA
GTCTCCGAATGA


Translation (284 aa):
MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLG
V
WGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTD
A
GAAKASSPSRSRHSPYAWMRKTVQVT
GKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNL
G
LSERQ
VKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
I
VSE




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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