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Report for CCDS533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
533.1 Public Homo sapiens 1 LRRC41 24 110 108 CCDS HistoryNCBI Gene:10489Re-query CCDS DB by CCDS ID:533.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343304.10 ENSP00000343298.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343304.10Link to Ensembl Protein Viewer:ENSP00000343298.6Re-query CCDS DB by Nucleotide ID:ENST00000343304Re-query CCDS DB by Protein ID:ENSP00000343298
Original member Current member EBI ENST00000617190.5 ENSP00000477792.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617190.5Link to Ensembl Protein Viewer:ENSP00000477792.1Re-query CCDS DB by Nucleotide ID:ENST00000617190Re-query CCDS DB by Protein ID:ENSP00000477792
Original member Current member NCBI NM_006369.5 NP_006360.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006369.5Link to Protein Sequence:NP_006360.3Re-query CCDS DB by Nucleotide ID:NM_006369Re-query CCDS DB by Protein ID:NP_006360Link to BLAST:NP_006360.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006360.3 812 Q15345-2 812 100% 0 0

Chromosomal Locations for CCDS 533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46278865 46279084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46279182 46279257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46279492 46279614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46280192 46280290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46280396 46280560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46281125 46281385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46285362 46286499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46297563 46297633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46298284 46298370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46303124 46303322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGGCGGCGCCCGAGGCCTGGCGCGCCCGGAGTTGCTGGTTCTGTGAGGTAGCGGCGGCAACGACCATGG
AGGCCACGTCCCGGGAGGCGGCGCCAGCGAAGAGCTCGGCCTCGGGCCCCAACGCTCCCCCCGCCCTGTT
CGAGCTGTGCGGGCGGGCGGTGAGCGCCCATATGGGGGTTCTGGAGAGCGGGGTGTGGGCCCTCCCAGGC
CCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCA
AGAAAGGCCTCTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAG
TTTGGAAAGTGTGACATGTTGGCGAGCCAAGTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACC
ATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCTTCTGCACAGCTCCCGCCATG
TCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGT
TCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCT
CAGCAGTCACTTCGGCAGCTGTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACT
CCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCTCACCATGAGTGCTGGCTTCTGGCAACCAGG
GCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGG
TCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCA
GCCGGCGTAAGAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCAC
ACAGGAGAGCCTGACAGCAGGCGGAACAGACCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAG
GCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGCCTCTTCTTCTACATCCTCAT
ACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAA
GAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTG
GCTGGCGAGAAGGAGGATGGCGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAG
ATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACAAAGATTCCGCAGCATCTCCACCTTGGAGCT
ATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTGGGTGTCACTG
GAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCC
TGTCAGGCCAGGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCT
GGAGCTGACACGTGCTATCGTGCGAGCACTGCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCA
AGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCACATAATAGGCGATGAGGAGA
TACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTG
CTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAG
GATTTTGGGCTTGTTTTGCAAACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACA
TGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCTACAGAATCTGACTCTGCAAGAGATTACCTT
CTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGCTATGAAGGGC
AACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAG
ATGTTTTCTCAGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGA
TGGGCTTCTGGAGTTCGCCAAGCGGCTGGAGCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTC
CAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCGGCTCCGGGCTACCTGCCATG
TGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGA

Translation (812 aa):
MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPNAPPALFELCGRAVSAHMGVLESGVWALPG
PILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEAFFSHVLRGT
IDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAA
QQSLRQLLHQLIHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEG
SLLLGSRRPRRDAAERCAAALMASRRKSEAKQMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHE
APGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGARTRQGPGAESEDLYDFVFIV
AGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSL
ESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHP
SQRDNPGVPGNAGPPSHIIGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQ
DFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKG
NSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLF
QNWLDQDAVTAREAIRRLRATCHVVSDSWDSSQAFADYVSTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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