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Report for CCDS7108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7108.1 Public Homo sapiens 10 RPP38 24 110 108 CCDS HistoryNCBI Gene:10557Re-query CCDS DB by CCDS ID:7108.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378197.5 ENSP00000367439.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378197.5Link to Ensembl Protein Viewer:ENSP00000367439.4Re-query CCDS DB by Nucleotide ID:ENST00000378197Re-query CCDS DB by Protein ID:ENSP00000367439
Original member Current member EBI ENST00000378202.5 ENSP00000367444.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378202.5Link to Ensembl Protein Viewer:ENSP00000367444.5Re-query CCDS DB by Nucleotide ID:ENST00000378202Re-query CCDS DB by Protein ID:ENSP00000367444
Original member Current member EBI ENST00000378203.5 ENSP00000367445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378203.5Link to Ensembl Protein Viewer:ENSP00000367445.1Re-query CCDS DB by Nucleotide ID:ENST00000378203Re-query CCDS DB by Protein ID:ENSP00000367445
Original member Current member EBI ENST00000616640.1 ENSP00000478982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616640.1Link to Ensembl Protein Viewer:ENSP00000478982.1Re-query CCDS DB by Nucleotide ID:ENST00000616640Re-query CCDS DB by Protein ID:ENSP00000478982
Original member Current member NCBI NM_001097590.3 NP_001091059.1 Accepted alive Link to Nucleotide Sequence:NM_001097590.3Link to Protein Sequence:NP_001091059.1Re-query CCDS DB by Nucleotide ID:NM_001097590Re-query CCDS DB by Protein ID:NP_001091059Link to BLAST:NP_001091059.1
Original member Current member NCBI NM_001265601.2 NP_001252530.1 Accepted alive Link to Nucleotide Sequence:NM_001265601.2Link to Protein Sequence:NP_001252530.1Re-query CCDS DB by Nucleotide ID:NM_001265601Re-query CCDS DB by Protein ID:NP_001252530Link to BLAST:NP_001252530.1
Original member Current member NCBI NM_006414.5 NP_006405.2 Accepted alive Link to Nucleotide Sequence:NM_006414.5Link to Protein Sequence:NP_006405.2Re-query CCDS DB by Nucleotide ID:NM_006414Re-query CCDS DB by Protein ID:NP_006405Link to BLAST:NP_006405.2
Original member Current member NCBI NM_183005.5 NP_892117.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183005.5Link to Protein Sequence:NP_892117.1Re-query CCDS DB by Nucleotide ID:NM_183005Re-query CCDS DB by Protein ID:NP_892117Link to BLAST:NP_892117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091059.1 283 P78345 283 100% 0 0
NP_001252530.1 283 P78345 283 100% 0 0
NP_006405.2 283 P78345 283 100% 0 0
NP_892117.1 283 P78345 283 100% 0 0

Chromosomal Locations for CCDS 7108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 15103315 15104166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCTGCAGCTCCTCAAGCACCGGGGCGGGGATCTCTCCGTAAGACGAGACCTCTGGTTGTGAAGACGT
CGTTGAACAACCCATACATCATCCGCTGGAGCGCTCTGGAGAGCGAGGATATGCACTTCATCCTACAGAC
GCTTGAGGACAGGCTTAAAGCTATTGGACTTCAGAAGATTGAAGATAAGAAGAAAAAGAACAAAACACCT
TTTCTGAAAAAAGAAAGCAGAGAGAAATGCAGCATTGCTGTTGATATTAGTGAGAATCTGAAGGAGAAGA
AAACAGATGCTAAGCAGCAAGTGTCAGGGTGGACGCCTGCACACGTCAGGAAGCAGCTTGCCATTGGCGT
TAACGAAGTTACCAGAGCCCTGGAAAGGAGGGAACTGCTGTTAGTTCTGGTGTGTAAATCAGTCAAGCCT
GCCATGATCACCTCACACTTGATTCAGTTAAGCCTAAGCAGAAGTGTCCCTGCCTGTCAGGTCCCCCGGC
TCAGTGAGAGAATCGCCCCCGTCATTGGCTTAAAATGTGTTCTAGCCTTGGCGTTCAAAAAGAACACCAC
TGACTTTGTGGACGAAGTAAGAGCCATCATCCCCAGAGTCCCCAGTTTAAGTGTACCATGGCTTCAAGAC
AGAATTGAAGATTCTGGGGAAAATTTAGAGACTGAACCTCTGGAAAGCCAAGACAGAGAGCTTTTGGACA
CTTCATTTGAAGATCTGTCAAAACCTAAGAGAAAGCTTGCTGACGGTCGGCAGGCTTCTGTAACATTACA
ACCCCTTAAAATAAAGAAACTGATTCCAAACCCTAATAAGATAAGGAAACCACCCAAAAGTAAAAAAGCT
ACTCCAAAGTAA

Translation (283 aa):
MAAAPQAPGRGSLRKTRPLVVKTSLNNPYIIRWSALESEDMHFILQTLEDRLKAIGLQKIEDKKKKNKTP
FLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKP
AMITSHLIQLSLSRSVPACQVPRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRAIIPRVPSLSVPWLQD
RIEDSGENLETEPLESQDRELLDTSFEDLSKPKRKLADGRQASVTLQPLKIKKLIPNPNKIRKPPKSKKA
TPK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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