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Report for CCDS43337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43337.1 Public Homo sapiens 5 POLR3G 24 110 108 CCDS HistoryNCBI Gene:10622Re-query CCDS DB by CCDS ID:43337.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504930.5 ENSP00000421637.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504930.5Link to Ensembl Protein Viewer:ENSP00000421637.1Re-query CCDS DB by Nucleotide ID:ENST00000504930Re-query CCDS DB by Protein ID:ENSP00000421637
Original member Current member EBI ENST00000651687.1 ENSP00000498469.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651687.1Link to Ensembl Protein Viewer:ENSP00000498469.1Re-query CCDS DB by Nucleotide ID:ENST00000651687Re-query CCDS DB by Protein ID:ENSP00000498469
Original member Current member NCBI NM_001370351.1 NP_001357280.1 Accepted alive Link to Nucleotide Sequence:NM_001370351.1Link to Protein Sequence:NP_001357280.1Re-query CCDS DB by Nucleotide ID:NM_001370351Re-query CCDS DB by Protein ID:NP_001357280Link to BLAST:NP_001357280.1
Original member Current member NCBI NM_001370354.1 NP_001357283.1 Accepted alive Link to Nucleotide Sequence:NM_001370354.1Link to Protein Sequence:NP_001357283.1Re-query CCDS DB by Nucleotide ID:NM_001370354Re-query CCDS DB by Protein ID:NP_001357283Link to BLAST:NP_001357283.1
Original member Current member NCBI NM_006467.3 NP_006458.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006467.3Link to Protein Sequence:NP_006458.2Re-query CCDS DB by Nucleotide ID:NM_006467Re-query CCDS DB by Protein ID:NP_006458Link to BLAST:NP_006458.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357280.1 223 O15318 223 100% 0 0
NP_001357283.1 223 O15318 223 100% 0 0
NP_006458.2 223 O15318 223 100% 0 0

Chromosomal Locations for CCDS 43337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 90485568 90485684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90488000 90488129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90495677 90495733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90497656 90497706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90501906 90501988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90506528 90506674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90512053 90512139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCTGGGAATAAAGGAAGAGGACGTGCTGCTTATACCTTTAATATTGAGGCTGTTGGATTTAGCAAAG
GTGAAAAGTTACCTGATGTAGTGTTGAAACCACCCCCACTATTTCCTGATACAGATTATAAACCAGTGCC
ACTGAAAACAGGAGAAGGTGAAGAATATATGCTGGCTTTGAAACAGGAGTTGAGAGAAACAATGAAAAGA
ATGCCTTATTTTATTGAAACACCTGAAGAAAGACAAGATATTGAAAGGTATAGTAAAAGATACATGAAGG
TATACAAGGAAGAATGGATACCAGATTGGAGAAGACTTCCAAGAGAGATGATGCCAAGAAATAAATGTAA
AAAAGCAGGCCCAAAACCCAAAAAGGCAAAAGACGCAGGCAAAGGCACACCACTCACTAATACTGAAGAT
GTGTTGAAAAAAATGGAGGAATTGGAAAAAAGAGGTGATGGTGAAAAATCAGATGAGGAAAATGAAGAGA
AAGAAGGAAGCAAAGAGAAAAGTAAAGAAGGTGATGATGACGATGACGATGATGCCGCAGAACAGGAGGA
ATATGATGAAGAAGAGCAAGAAGAGGAAAATGACTACATTAATTCATACTTTGAAGATGGAGATGATTTT
GGCGCAGACAGTGATGACAACATGGATGAGGCAACCTATTAG

Translation (223 aa):
MAGNKGRGRAAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYMLALKQELRETMKR
MPYFIETPEERQDIERYSKRYMKVYKEEWIPDWRRLPREMMPRNKCKKAGPKPKKAKDAGKGTPLTNTED
VLKKMEELEKRGDGEKSDEENEEKEGSKEKSKEGDDDDDDDAAEQEEYDEEEQEEENDYINSYFEDGDDF
GADSDDNMDEATY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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