NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31270.1 Public Homo sapiens 10 LBX1 24 110 108 CCDS HistoryNCBI Gene:10660Re-query CCDS DB by CCDS ID:31270.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370193.4 ENSP00000359212.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370193.4Link to Ensembl Protein Viewer:ENSP00000359212.2Re-query CCDS DB by Nucleotide ID:ENST00000370193Re-query CCDS DB by Protein ID:ENSP00000359212
Original member Current member NCBI NM_006562.5 NP_006553.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006562.5Link to Protein Sequence:NP_006553.2Re-query CCDS DB by Nucleotide ID:NM_006562Re-query CCDS DB by Protein ID:NP_006553Link to BLAST:NP_006553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006553.2 281 P52954 281 100% 0 0

Chromosomal Locations for CCDS 31270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101227270 101227790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101228491 101228815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGACTTCCAAGGAGGACGGCAAGGCGGCGCCGGGGGAGGAGCGGCGGCGCAGCCCGCTGGACCACCTGC
CTCCGCCTGCCAACTCCAACAAGCCACTGACGCCGTTCAGCATCGAGGACATCCTCAACAAGCCGTCTGT
GCGGAGAAGTTACTCGCTGTGCGGGGCGGCGCACCTGCTGGCCGCCGCGGACAAGCACGCGCAGGGCGGC
TTGCCCCTGGCGGGCCGCGCGCTGCTCTCGCAGACCTCGCCGCTGTGCGCGCTGGAGGAGCTCGCCAGCA
AGACGTTTAAGGGGCTGGAGGTCAGCGTTCTGCAGGCAGCCGAAGGCCGCGACGGTATGACCATCTTTGG
GCAGCGGCAGACCCCTAAGAAGCGGCGAAAGTCGCGCACGGCCTTCACCAACCACCAGATCTATGAATTG
GAAAAGCGCTTTCTATACCAGAAGTACCTGTCCCCCGCCGATCGCGACCAAATCGCGCAGCAGCTGGGCC
TCACCAACGCGCAAGTCATCACCTGGTTCCAGAATCGGCGCGCTAAGCTCAAGCGGGACCTGGAGGAGAT
GAAGGCCGACGTAGAGTCCGCCAAGAAACTGGGCCCCAGCGGGCAGATGGACATCGTGGCGCTGGCCGAA
CTCGAGCAGAACTCGGAGGCCACAGCCGGCGGTGGCGGCGGCTGCGGCAGGGCCAAGTCGAGGCCCGGCT
CTCCGGTCCTCCCCCCAGGCGCCCCGAAGGCCCCGGGCGCTGGCGCCCTGCAGCTCTCGCCTGCCTCTCC
GCTCACGGACCAGCCGGCCAGCAGCCAGGACTGCTCGGAGGACGAGGAAGACGAAGAGATCGACGTGGAC
GATTGA

Translation (281 aa):
MTSKEDGKAAPGEERRRSPLDHLPPPANSNKPLTPFSIEDILNKPSVRRSYSLCGAAHLLAAADKHAQGG
LPLAGRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYEL
EKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPSGQMDIVALAE
LEQNSEATAGGGGGCGRAKSRPGSPVLPPGAPKAPGAGALQLSPASPLTDQPASSQDCSEDEEDEEIDVD
D


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH