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Report for CCDS25412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25412.1 Public Mus musculus 11 Krt9 23 108 98 CCDS HistoryNCBI Gene:107656Re-query CCDS DB by CCDS ID:25412.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059707.2 ENSMUSP00000055255.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059707.2Link to Ensembl Protein Viewer:ENSMUSP00000055255.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059707Re-query CCDS DB by Protein ID:ENSMUSP00000055255
Original member Current member NCBI NM_201255.2 NP_957707.2 Accepted alive Link to Nucleotide Sequence:NM_201255.2Link to Protein Sequence:NP_957707.2Re-query CCDS DB by Nucleotide ID:NM_201255Re-query CCDS DB by Protein ID:NP_957707Link to BLAST:NP_957707.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_957707.2 743 Q6RHW0 743 100% 0 0

Chromosomal Locations for CCDS 25412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100187086 100187105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100188353 100189236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100189591 100189814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100189921 100190046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100190724 100190885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100191157 100191313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100191439 100191521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100192628 100193203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2232 nt):
ATGAGTTGCAGACAGAGCTCCTCATCTTTCTGGAGCAGCAGCAGCAGCTGTGGAGGAGGAGGAGGCAGAG
GGGGCAGCGGAGGCAGCATGCGATCTTCTTTCAGTCGCTCCTCCAGGGCTGGTGGAGGAGGAGGAGGCCG
CTTTAACTCTTCCAGTGGCTTTAGCGGGGGTGGCTTTTCGGCTTGTGGCGGTGGAGGTGGTGGCAGTTTT
GGCTCTAGCTATGGTGGAGGGTATGGAGGGGGTTTTAGTACAGGGAGTTACAGCGGTATGTTTGGTGGAG
GTTCTGGAGGTGGCTTTGGTGGTGGCTCTGGCGGTGGCTTTGGTGGTGGCTCTGGAGGTGGCTTTGGTGG
TGGCTCTGGAGGTGGTGAAGGCGGTATTCTGAACACCAATGAGAAAATCGTTATGCAGAACCTCAATTCC
CGTCTGGCCTCTTACATGGAGAAAGTACTAGAACTGGAGGAGAGCAACACTGCCATGGAGAAGCAGATCC
AGGACTGGTATTCAAAGAGGGGGCCCAAAGTCTTCCAGAAGGACAACACTCATTACTATGACACCATCGA
AGACCTGAAGGACAGAATTGTGGATCTCACGGTGAGGAACAACAAAACTCTCGTGGACATCGACAATACT
CGCATGACTATGGATGACTTCAGAGTTAAGCTTGAGATGGAGCAAAGCCTGCGCCAAGGGGTGGAAGGTG
ACATTAATGGCCTGAAGAAGGTGTTGGATGATCTGGTTATGGCGAAATCTGATCTGGAGATACTGCTTGA
TAGTTTGGAGGATGAGAAGAATGCCCTTACGAAGAACCACAAGGAGGAGATGAGCCAGTTGACGGGCCAG
AATGATGGAGATGTTAATGTGGAGATAAATGTTGCTCCTAGCACAGATCTCACCCGGGTCCTCAATGACA
TGCGTGAGGAATACGAACAGCTCATTTCTAAGAACCGCCAGGACATTGAACAACACTATGAGTCCAAGAT
GACCCAGATTGAGCAGCAAATGACAAATAGTGGCCAAGAGATGGAGAGCAACATGAAGCAAGTGTCCCAG
CTCCAGCACACTATCCAGGAACTGAATGTGGAGCTGCAGACTCAGCTTACCACGAAATCAGCCCTGGAGA
AGGCTTTGGAAGACACAAAGAACCGCTACTGTGGCCAGCTGCAGCAGATCCAGGAGCAGATCAGCGAGTT
GGAGGCCCAGCTTGCTGAGATCCGGGCAGAAACTGAATGCCAGAGTCAGGAATACAGCATTCTGCTCAGC
ATCAAGACACGGCTGGAGAAAGAAATTGAGACTTACCGGGAGCTCCTTGAAGGCGGCCAGCAAGACTTTG
AATCGTCTGGAGCTGGACAAATTGGCTTTGGAAGTGGCAAAGGAAGACAAAGAGGAAGTGGTGGCAGCTA
TGGAGGAGGAAGTGGGGGCAGCTATGGAGGAGGAAGTGGGGGCAGCTATGGAGGAGGAAGTGGGGGCAGC
TATGGAGGAGGAAGTGGAGGGAGCTATGGAGGAGGAAGTGGGGGCAGTCATGGTGGAAAAAGTGGAGGCA
GTCATGGAGGAGGAAGTGGGGGCAGCTATGGAGGAGAAAGTGGGGGCAGCCATGGAGGAGGAAGTGGGGG
CAGCTATGGTGGAGGAAGTGGGGGCAGCCATGGTGGAAAAAGTGGAGGAGGTTATGGAGGAGGAAGCAGC
TCTGGGGGAGGAAGTGGAGGCAGCTATGGAGGAGGAAGTGGGGGCAGCCATGGAGGAGGAAGTGGGGGCA
GCTATGGTGGAGGAAGTGGGGGCAGCCATGGTGGAAAAAGTGGAGGAGGTTATGGAGGAGGAAGCAGCTC
TGGGGGAGGAAGTGGAGGCAGCTATGGAGGAGGAAGTGGGGGCAGCCATGGTGGAAAAAGTGGGGGTAGC
TATGGAGGAGGAAGTGGTGGCAGCTATGGAGGAGGAAGTGGGGGCAGCCATGGTGGAAAAAGTGGAGGAG
GTTATGGAGGAGGAAGCAGCTCTGGGGGAGGAAGTGGAGGCAGCTATGGAGGAGGAAGTGGGGGCAGCCA
TGGTGGAAAAAGTGGAGGTAGCTATGGAGGAGGAAGCAGTTCTGGGGGAGGAAGTGGAGGCAGCTATGGA
GGAGGAAGTGGTTCTGGAGGAGGAAGTGGGGGTAGCTATGGTGGAGGAAATAGAAGGCCATCTCAGTCCC
AGTCCTCCTCAAAGTCTGCAGACTGCGATGATGATTCACAAGAGCACAAGATGCGATACTAG

Translation (743 aa):
MSCRQSSSSFWSSSSSCGGGGGRGGSGGSMRSSFSRSSRAGGGGGGRFNSSSGFSGGGFSACGGGGGGSF
GSSYGGGYGGGFSTGSYSGMFGGGSGGGFGGGSGGGFGGGSGGGFGGGSGGGEGGILNTNEKIVMQNLNS
RLASYMEKVLELEESNTAMEKQIQDWYSKRGPKVFQKDNTHYYDTIEDLKDRIVDLTVRNNKTLVDIDNT
RMTMDDFRVKLEMEQSLRQGVEGDINGLKKVLDDLVMAKSDLEILLDSLEDEKNALTKNHKEEMSQLTGQ
NDGDVNVEINVAPSTDLTRVLNDMREEYEQLISKNRQDIEQHYESKMTQIEQQMTNSGQEMESNMKQVSQ
LQHTIQELNVELQTQLTTKSALEKALEDTKNRYCGQLQQIQEQISELEAQLAEIRAETECQSQEYSILLS
IKTRLEKEIETYRELLEGGQQDFESSGAGQIGFGSGKGRQRGSGGSYGGGSGGSYGGGSGGSYGGGSGGS
YGGGSGGSYGGGSGGSHGGKSGGSHGGGSGGSYGGESGGSHGGGSGGSYGGGSGGSHGGKSGGGYGGGSS
SGGGSGGSYGGGSGGSHGGGSGGSYGGGSGGSHGGKSGGGYGGGSSSGGGSGGSYGGGSGGSHGGKSGGS
YGGGSGGSYGGGSGGSHGGKSGGGYGGGSSSGGGSGGSYGGGSGGSHGGKSGGSYGGGSSSGGGSGGSYG
GGSGSGGGSGGSYGGGNRRPSQSQSSSKSADCDDDSQEHKMRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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