NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17630.1 Public Mus musculus 3 Sf3b4 23 108 98 CCDS HistoryNCBI Gene:107701Re-query CCDS DB by CCDS ID:17630.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076372.4 ENSMUSP00000075709.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076372.4Link to Ensembl Protein Viewer:ENSMUSP00000075709.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076372Re-query CCDS DB by Protein ID:ENSMUSP00000075709
Original member Current member NCBI NM_153053.4 NP_694693.1 Accepted alive Link to Nucleotide Sequence:NM_153053.4Link to Protein Sequence:NP_694693.1Re-query CCDS DB by Nucleotide ID:NM_153053Re-query CCDS DB by Protein ID:NP_694693Link to BLAST:NP_694693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694693.1 424 Q8QZY9 424 100% 0 0

Chromosomal Locations for CCDS 17630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96172574 96172607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96172971 96173099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96173541 96174083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96174323 96174529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96176635 96176808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96176979 96177166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCTGCCGGACCGATCTCCGAACGGAATCAGGATGCCACGGTGTACGTGGGCGGTCTGGACGAGAAAG
TG
AGTGAGCCGCTGCTGTGGGAGCTCTTTCTCCAGGCAGGGCCAGTGGTCAACACCCACATGCCCAAGGA
C
AGAGTCACTGGCCAGCACCAGGGCTATGGCTTTGTTGAATTCCTGAGCGAGGAAGATGCCGACTATGCC
ATT
AAGATTATGAACATGATCAAACTCTATGGAAAGCCAATACGGGTGAACAAGGCCTCAGCTCACAACA
AA
AACCTGGATGTGGGAGCCAACATTTTCATTGGAAATCTGGACCCAGAAATTGATGAAAAGCTGCTTTA
C
GATACTTTCAGCGCCTTTGGAGTCATCCTACAGACCCCCAAGATCATGCGGGACCCTGACACAGGCAAC
TCC
AAGGGTTACGCCTTCATTAATTTTGCCTCCTTCGATGCTTCGGATGCAGCAATTGAGGCCATGAACG
GG
CAGTACCTGTGTAACCGTCCTATCACTGTGTCTTATGCCTTCAAGAAGGACTCTAAGGGTGAACGCCA
T
GGCTCAGCAGCTGAAAGACTCCTGGCAGCCCAGAACCCGCTGTCCCAGGCTGACCGCCCTCACCAGCTG
TTT
GCCGATGCACCCCCTCCGCCCTCTGCCCCCAATCCCGTGGTTTCATCCCTGGGTTCTGGGCTTCCTC
CA
CCAGGCATGCCGCCTCCTGGCTCTTTTCCACCTCCAGTGCCACCTCCTGGGGCCCTCCCTCCTGGGAT
T
CCCCCAGCCATGCCCCCACCACCTATGCCACCTGGGGCTGGAGGACATGGCCCCCCAGCAGCAGGGACT
CCA
GGGGCTGGACATCCCGGTCACGGACACTCACATCCTCACCCGTTCCCACCAGGTGGGATGCCCCATC
CA
GGGATGTCCCAGATGCAGCTGGCCCACCATGGCCCCCATGGCCTAGGACACCCCCATGCTGGGCCTCC
G
GGCTCTGGGGGGCAGCCACCACCTCGGCCACCTCCTGGAATGCCTCATCCTGGACCTCCTCCAATGGGC
ATG
CCCCCCCGAGGGCCTCCTTTTGGATCTCCCATGGGTCACCCAGGTCCCATGCCTCCACACGGCATGC
GT
GGGCCTCCTCCATTGATGCCCCCTCATGGATACACGGGTCCTCCAAGACCCCCTCCCTATGGCTACCA
G
CGGGGGCCCCTCCCGCCACCCAGACCCACTCCACGGCCCCCAGTTCCACCTCGTGGTCCTCTTCGGGGC
CCA
CTTCCTCAGTAA


Translation (424 aa):
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA
I
KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN
S
KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQL
F
ADAPPPPSAPNPVVSSLGSGLPPP
GMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGT
P
GAGHPGHGHSHPHPFPPGGMPHP
GMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMG
M
PPRGPPFGSPM
GHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
P
LPQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser