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Report for CCDS37885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37885.1 Public Mus musculus 19 Tbc1d10c 23 108 98 CCDS HistoryNCBI Gene:108995Re-query CCDS DB by CCDS ID:37885.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235450.1 ENSMUSP00000158437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235450.1Link to Ensembl Protein Viewer:ENSMUSP00000158437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235450Re-query CCDS DB by Protein ID:ENSMUSP00000158437
Original member Current member NCBI NM_178650.3 NP_848765.2 Accepted alive Link to Nucleotide Sequence:NM_178650.3Link to Protein Sequence:NP_848765.2Re-query CCDS DB by Nucleotide ID:NM_178650Re-query CCDS DB by Protein ID:NP_848765Link to BLAST:NP_848765.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848765.2 444 Q8C9V1-1 444 100% 0 0

Chromosomal Locations for CCDS 37885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4184726 4185073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4185352 4185506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4187942 4188131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4188246 4188311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4188944 4189058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4189213 4189319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4189406 4189513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4189864 4189963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4190664 4190809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGCCCAGGCCCTGGGAGAGGACTTGTTATCAGAACTACAGGATGATTCTAGCTCCCTAGGGTCTGACT
CAGAGCTGAGTGGGCCCAGTCCATATCGCCAGGCTGACCGTTATGGCTTCATTGGGGGCAACTCAGGTGA
ACTGAGGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTA
CACTGGGAGAAGACCATGTCCCGACGATACAAGAAGGTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAG
CCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTA
CCAGGAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAG
TTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGGGCAGCAGGGGCTGCTGCAGGTTCTCAAGG
CCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCAT
GCATCTACCCCCAGAGGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTAT
GGGCCCCACATGGAGGCCGTACAGCTGGATGCTGAAGTGTTCATGGCCCTTCTGAGGCGGCAGCTCCCAC
GAGTGTACAAGCACCTGCAGCAGGTAGGCGTCGGCCCCCTGCTCTACCTGCCTGAGTGGTTCCTGTGCCT
CTTCACTCGGTCGCTGCCCTTCCCCACAGTACTGCGCATCTGGGATGCCTTCCTCAGTGAGGGGGCTAAG
GTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCC
CAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCAT
GTCCCAGGTGCACAGTGTAACCCTGTCTGAGCGAGTCCTGCAACAGGAAATCAGGATCCAGCTAGCCCAG
CTTTCGAAGTCACTCCCTGGGCCAGCCCCTCTGCCACAGGCCCGCCTTCCTGGGGCCCAAGCCATCTTCG
AGTCCCAGCAGCTGGCAGGGGTTCGAGAAAGCACCAAACCTGAGATACCTCGAATTGTGGTGCAGCCTCC
AGAGGAGCCCAAGCCACCACGGCGCAAGCCACAGACCCGGGGTAAGACTTTCCATGGACTCCTGATAAGG
GCCAGGGGACCCCCTATTGAGGGCCCCTCCAGGTCCCAACGAGGCTCTGCCTCTTTCCTGGACACCCGAT
TCTAA

Translation (444 aa):
MAQALGEDLLSELQDDSSSLGSDSELSGPSPYRQADRYGFIGGNSGELRLCQPSADLIRQREMKWVEMTL
HWEKTMSRRYKKVKIQCRKGIPSALRARCWPLLCGARMCQKNNPGTYQELAAAPGDPQWMETIGRDLHRQ
FPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYY
GPHMEAVQLDAEVFMALLRRQLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAK
VLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPPTQLQEEVFMSQVHSVTLSERVLQQEIRIQLAQ
LSKSLPGPAPLPQARLPGAQAIFESQQLAGVRESTKPEIPRIVVQPPEEPKPPRRKPQTRGKTFHGLLIR
ARGPPIEGPSRSQRGSASFLDTRF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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