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Report for CCDS17432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17432.1 Public Mus musculus 3 Fgb 23 108 98 CCDS HistoryNCBI Gene:110135Re-query CCDS DB by CCDS ID:17432.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17432.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048246.4 ENSMUSP00000039472.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048246.4Link to Ensembl Protein Viewer:ENSMUSP00000039472.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048246Re-query CCDS DB by Protein ID:ENSMUSP00000039472
Original member Current member NCBI NM_181849.3 NP_862897.1 Accepted alive Link to Nucleotide Sequence:NM_181849.3Link to Protein Sequence:NP_862897.1Re-query CCDS DB by Nucleotide ID:NM_181849Re-query CCDS DB by Protein ID:NP_862897Link to BLAST:NP_862897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862897.1 481 Q8K0E8 481 100% 0 0

Chromosomal Locations for CCDS 17432.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 83042403 83042634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83043232 83043517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83043777 83043902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83044219 83044332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83044873 83045100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83046002 83046185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83046654 83046848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83049681 83049761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAGGCATCTATGGCTGCTGCTGCTATTGTGTGTTTTCTCAGTTCAAACTCAAGCTGCCGATGATGACT
ACGATGAACCGACGGATAGCTTGGATGCCCGTGGTCATCGACCTGTTGACAGGAGAAAGGAAGAGCCTCC
TAGCCTAAGACCTGCCCCTCCTCCTATCAGTGGAGGGGGCTATCGAGCCCGTCCAGCCAAGGCTACTGCC
AACCAGAAGAAAGTAGAACGGAGACCCCCCGATGCAGGAGGCTGTCTTCATGCTGACACAGACATGGGAG
TGTTGTGTCCTACGGGATGTACATTGCAACAAACGTTGTTAAACCAGGAAAGGCCAATCAAGAGTAGTAT
TGCTGAGTTAAATAACAACATACAGTCTGTTTCCGATACCTCCTCAGTCACCTTTCAGTACCTGACTCTG
CTAAAGGACATGTGGAAAAAGAAGCAAGCTCAAGTTAAAGAGAATGAAAATGTCATAAATGAGTACTCCT
CCATCCTGGAAGATCAGAGATTATATATTGATGAGACTGTGAATGATAATATCCCCCTTAATCTTCGTGT
GCTCCGCTCAATCCTGGAGGACCTGAGAAGCAAAATACAAAAATTAGAGTCTGACATCTCAGCTCAAATG
GAATACTGCCGCACTCCATGCACTGTCAGCTGCAACATTCCAGTGGTGTCTGGGAAAGAGTGTGAGGAGA
TCATTAGGAAGGGAGGTGAGACATCCGAAATGTATCTCATCCAGCCTGACACCTCCATCAAGCCGTACAG
AGTATACTGTGACATGAAAACAGAAAACGGAGGATGGACAGTCATACAGAACCGTCAGGATGGCAGCGTC
GACTTTGGCAGGAAATGGGACCCATACAAAAAAGGATTCGGAAATATTGCCACCAATGAAGACGCGAAGA
AGTACTGTGGCTTGCCAGGTGAATATTGGCTTGGCAATGATAAGATTAGCCAGCTCACCAGGATGGGACC
CACAGAACTTCTCATTGAAATGGAGGACTGGAAAGGAGACAAGGTGAAGGCACATTATGGAGGCTTCACG
GTACAGAACGAGGCCAGCAAATACCAAGTCTCAGTGAACAAATACAAAGGGACGGCTGGCAACGCCCTCA
TGGACGGGGCCTCTCAACTGGTGGGGGAGAACAGAACCATGACCATCCACAACGGCATGTTCTTCAGCAC
GTACGACAGGGACAACGACGGCTGGGTAACTACGGATCCAAGAAAACAGTGCTCCAAAGAAGATGGTGGT
GGCTGGTGGTATAACAGATGCCATGCAGCCAATCCAAATGGCAGATACTACTGGGGTGGCCTTTACAGCT
GGGACATGTCCAAGCACGGCACAGATGATGGTGTGGTGTGGATGAACTGGAAGGGATCGTGGTACTCAAT
GAGGAGGATGTCTATGAAGATCAGGCCCTTCTTCCCACAGCAATAG

Translation (481 aa):
MRHLWLLLLLCVFSVQTQAADDDYDEPTDSLDARGHRPVDRRKEEPPSLRPAPPPISGGGYRARPAKATA
NQKKVERRPPDAGGCLHADTDMGVLCPTGCTLQQTLLNQERPIKSSIAELNNNIQSVSDTSSVTFQYLTL
LKDMWKKKQAQVKENENVINEYSSILEDQRLYIDETVNDNIPLNLRVLRSILEDLRSKIQKLESDISAQM
EYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDTSIKPYRVYCDMKTENGGWTVIQNRQDGSV
DFGRKWDPYKKGFGNIATNEDAKKYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFT
VQNEASKYQVSVNKYKGTAGNALMDGASQLVGENRTMTIHNGMFFSTYDRDNDGWVTTDPRKQCSKEDGG
GWWYNRCHAANPNGRYYWGGLYSWDMSKHGTDDGVVWMNWKGSWYSMRRMSMKIRPFFPQQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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