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Report for CCDS38974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38974.1 Public Mus musculus 4 Pgd 23 108 98 CCDS HistoryNCBI Gene:110208Re-query CCDS DB by CCDS ID:38974.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084124.6 ENSMUSP00000081141.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084124.6Link to Ensembl Protein Viewer:ENSMUSP00000081141.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084124Re-query CCDS DB by Protein ID:ENSMUSP00000081141
Original member Current member NCBI NM_001081274.2 NP_001074743.1 Accepted alive Link to Nucleotide Sequence:NM_001081274.2Link to Protein Sequence:NP_001074743.1Re-query CCDS DB by Nucleotide ID:NM_001081274Re-query CCDS DB by Protein ID:NP_001074743Link to BLAST:NP_001074743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074743.1 483 Q9DCD0 483 100% 0 0

Chromosomal Locations for CCDS 38974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149150644 149150763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149150853 149150975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149151113 149151212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149153864 149153997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149154166 149154296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149156607 149156796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149157961 149158095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149160059 149160128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149160835 149160953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149161629 149161694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149165050 149165229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149166007 149166082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149166587 149166594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCCCAAGCTGACATTGCACTGATCGGACTGGCTGTCATGGGCCAGAACTTAATTTTGAACATGAATG
ATCATGGATTTGTGGTCTGTGCTTTCAATAGGACAGTCTCCAAAGTCGATGACTTCTTGGCCAACGAGGC
GAAGGGCACCAAGGTGGTTGGTGCACAGTCCTTAAAGGACATGGTCTCCAAACTAAAGAAGCCCCGCCGG
GTCATCCTGCTTGTGAAGGCCGGGCAAGCCGTGGATGATTTCATCGAGAAATTAGTACCCTTGTTGGACA
CGGGTGACATCATCATCGATGGAGGAAATTCTGAATACCGGGACACGACAAGAAGATGCCGGGACCTCAA
GGCCAAGGGCATCTTGTTTGTGGGGAGCGGAGTCAGTGGTGGTGAGGAAGGGGCTCGGTACGGGCCGTCA
CTCATGCCAGGAGGGAACAAAGAGGCTTGGCCCCACATCAAGGCGATCTTCCAAGCCATCGCTGCAAAAG
TGGGAACCGGAGAACCCTGCTGTGACTGGGTGGGAGATGAGGGGGCGGGGCACTTTGTGAAGATGGTGCA
CAACGGGATAGAGTATGGAGACATGCAGCTCATCTGTGAGGCTTACCATTTGATGAAGGATGTTCTGGGC
ATGCGGCATGAGGAGATGGCTCAGGCATTTGAAGAATGGAACAAGACAGAGCTGGACTCATTCCTGATTG
AAATCACTGCTAACATTCTCAAGTACCGGGACACTGACGGCAAAGAGCTGTTGCCAAAGATCCGGGACAG
TGCTGGGCAGAAGGGCACTGGGAAGTGGACCGCCATCTCGGCGCTGGAGTACGGCATGCCCGTCACCCTC
ATTGGAGAAGCTGTCTTTGCTCGGTGCTTGTCCTCTCTGAAGGAGGAGCGGGTTCAGGCCAGCCAAAAGC
TGAAGGGTCCTAAGGTGGTCCAGCTGGAAGGCAGTAAGAAGTCATTCCTGGAGGACATCCGTAAGGCCCT
CTATGCTTCCAAGATCATCTCCTACGCCCAAGGCTTTATGCTGCTCAGACAGGCAGCCACTGAGTTTGGC
TGGACCCTCAATTATGGCGGCATTGCCCTGATGTGGAGAGGGGGCTGCATCATCCGAAGTGTGTTCCTGG
GAAAAATTAAAGATGCATTTGAGCGAAACCCAGAACTTCAGAACCTACTGCTAGATGACTTCTTTAAGTC
AGCAGTTGACAACTGCCAGGACTCCTGGCGGCGGGTGATCAGCACTGGGGTGCAAGCAGGCATTCCCATG
CCCTGCTTCACTACTGCCCTCTCCTTCTATGATGGGTACAGACACGAGATGCTGCCAGCAAACCTCATCC
AGGCTCAACGGGATTACTTTGGGGCTCACACCTATGAACTCTTAACCAAACCGGGAGAATTTATCCACAC
CAACTGGACGGGCCACGGGGGCAGTGTGTCATCCTCTTCATACAATGCCTAG

Translation (483 aa):
MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKDMVSKLKKPRR
VILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPS
LMPGGNKEAWPHIKAIFQAIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG
MRHEEMAQAFEEWNKTELDSFLIEITANILKYRDTDGKELLPKIRDSAGQKGTGKWTAISALEYGMPVTL
IGEAVFARCLSSLKEERVQASQKLKGPKVVQLEGSKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG
WTLNYGGIALMWRGGCIIRSVFLGKIKDAFERNPELQNLLLDDFFKSAVDNCQDSWRRVISTGVQAGIPM
PCFTTALSFYDGYRHEMLPANLIQAQRDYFGAHTYELLTKPGEFIHTNWTGHGGSVSSSSYNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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